Publications by authors named "Erin D Jeffery"

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Protein Sequencing with Single Amino Acid Resolution Discerns Peptides That Discriminate Tropomyosin Proteoforms.
Natchanon Sittipongpittaya, Kenneth A Skinner, Erin D Jeffery, Emily F Watts, Gloria M Sheynkman

J Proteome Res· August 2025

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Cas13d-mediated isoform-specific RNA knockdown with a unified computational and experimental toolbox.
Megan D Schertzer, Andrew Stirn, Keren Isaev, Laura Pereira, Stella H Park, Erin D Jeffery

Nat Commun· July 2025

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Expanding the landscape of aging via orbitrap astral mass spectrometry and tandem mass tag integration.
Gregory R Keele, Yue Dou, Seth P Kodikara, Erin D Jeffery, Dina L Bai

Nat Commun· May 2025

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Expanding the Landscape of Aging via Orbitrap Astral Mass Spectrometry and Tandem Mass Tag (TMT) Integration.
Gregory R Keele, Yue Dou, Seth P Kodikara, Erin D Jeffery, Dina Bai

bioRxiv· December 2024

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IS-PRM-Based Peptide Targeting Informed by Long-Read Sequencing for Alternative Proteome Detection.
Jennifer A Korchak, Erin D Jeffery, Saikat Bandyopadhyay, Ben T Jordan, Micah D Lehe

J Am Soc Mass Spectrom· November 2024

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Long-read proteogenomics to connect disease-associated sQTLs to the protein isoform effectors of disease.
Abdullah Abood, Larry D Mesner, Erin D Jeffery, Mayank Murali, Micah D Lehe

Am J Hum Genet· September 2024

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IS-PRM-based peptide targeting informed by long-read sequencing for alternative proteome detection.
Jennifer A Korchak, Erin D Jeffery, Saikat Bandyopadhyay, Ben T Jordan, Micah Lehe

bioRxiv· April 2024

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Splicing neoantigen discovery with SNAF reveals shared targets for cancer immunotherapy.
Guangyuan Li, Shweta Mahajan, Siyuan Ma, Erin D Jeffery, Xuan Zhang

Sci Transl Med· January 2024

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Connexin 37 sequestering of activated-ERK in the cytoplasm promotes p27-mediated endothelial cell cycle arrest.
Bipul R Acharya, Jennifer S Fang, Erin D Jeffery, Nicholas W Chavkin, Gael Genet

Life Sci Alliance· August 2023

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Long-read proteogenomics to connect disease-associated sQTLs to the protein isoform effectors of disease.
Abdullah Abood, Larry D Mesner, Erin D Jeffery, Mayank Murali, Micah Lehe

bioRxiv· March 2023

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Endothelial cell cycle state determines propensity for arterial-venous fate.
Nicholas W Chavkin, Gael Genet, Mathilde Poulet, Erin D Jeffery, Corina Marziano

Nat Commun· October 2022

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Enhanced protein isoform characterization through long-read proteogenomics.
Rachel M Miller, Ben T Jordan, Madison M Mehlferber, Erin D Jeffery, Christina Chatzipantsiou

Genome Biol· March 2022

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Characterization of protein isoform diversity in human umbilical vein endothelial cells via long-read proteogenomics.
Madison M Mehlferber, Erin D Jeffery, Jamie Saquing, Ben T Jordan, Leon Sheynkman

RNA Biol· January 2022

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Characteristics of Immune Memory and Effector Activity to Cancer-Expressed MHC Class I Phosphopeptides Differ in Healthy Donors and Ovarian Cancer Patients.
Amanda M Lulu, Kara L Cummings, Erin D Jeffery, Paisley T Myers, Dennis Underwood

Cancer Immunol Res· November 2021

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Full-length transcript sequencing of human and mouse cerebral cortex identifies widespread isoform diversity and alternative splicing.
Szi Kay Leung, Aaron R Jeffries, Isabel Castanho, Ben T Jordan, Karen Moore, Erin D Jeffery

Cell Rep· November 2021

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The proteome of mouse vestibular hair bundles over development.
Jocelyn F Krey, Nicholas E Sherman, Erin D Jeffery, Dongseok Choi, Peter G Barr-Gillespie

Sci Data· December 2015

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Accurate label-free protein quantitation with high- and low-resolution mass spectrometers.
Jocelyn F Krey, Phillip A Wilmarth, Jung-Bum Shin, John Klimek, Nicholas E Sherman, Erin D Jeffery

J Proteome Res· February 2014

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Molecular architecture of the chick vestibular hair bundle.
Jung-Bum Shin, Jocelyn F Krey, Ahmed Hassan, Zoltan Metlagel, Andrew N Tauscher, Erin D Jeffery

Nat Neurosci· March 2013

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Trk activation of the ERK1/2 kinase pathway stimulates intermediate chain phosphorylation and recruits cytoplasmic dynein to signaling endosomes for retrograde axonal transport.
David J Mitchell, Kiev R Blasier, Erin D Jeffery, Mitchell W Ross, Ashok K Pullikuth

J Neurosci· October 2012

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Matrix rigidity regulates cancer cell growth by modulating cellular metabolism and protein synthesis.
Robert W Tilghman, Edik M Blais, Catharine R Cowan, Nicholas E Sherman, Pablo R Grigera, Erin D Jeffery

PLoS One· September 2012

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Identification of phosphorylation sites in betaPIX and PAK1.
Mark W Mayhew, Erin D Jeffery, Nicholas E Sherman, Kristina Nelson, Joy M Polefrone

J Cell Sci· November 2007

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An experimentally derived database of candidate Ras-interacting proteins.
Lawrence E Goldfinger, Celeste Ptak, Erin D Jeffery, Jeffrey Shabanowitz, Jaewon Han

J Proteome Res· May 2007

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RLIP76 (RalBP1) is an R-Ras effector that mediates adhesion-dependent Rac activation and cell migration.
Lawrence E Goldfinger, Celeste Ptak, Erin D Jeffery, Jeffrey Shabanowitz, Donald F Hunt

J Cell Biol· September 2006

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Identification of phosphorylation sites in GIT1.
Donna J Webb, Mark W Mayhew, Mykola Kovalenko, Melanie J Schroeder, Erin D Jeffery

J Cell Sci· July 2006

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Cortactin phosphorylation sites mapped by mass spectrometry.
Karen H Martin, Erin D Jeffery, Pablo R Grigera, Jeffrey Shabanowitz, Donald F Hunt

J Cell Sci· July 2006

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