Publications by authors named "Eugene Makeyev"

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Enhanced hybridization-proximity labeling discovers protein interactomes of single RNA molecules.
Karen Yap, Tek Hong Chung, Erin C Hedges, Agnes L Nishimura, Christopher E Shaw, Eugene V Makeyev

Nat Commun· October 2025

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M6A-dependent RNA condensation underlies FUS autoregulation and can be harnessed for ALS therapy development.
Wan-Ping Huang, Vedanth Kumar, Karen Yap, Haiyan An, Sabin J John, Eugene V Makeyev

Sci Adv· July 2025

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The perinucleolar compartment: structure, function, and utility in anti-cancer drug development.
Eugene V Makeyev, Sui Huang

Nucleus· December 2024

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Recurrent disruption of tumour suppressor genes in cancer by somatic mutations in cleavage and polyadenylation signals.
Yaroslav Kainov, Fursham Hamid, Eugene V Makeyev

Elife· December 2024

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Structure of the RNA-dependent RNA polymerase P2 from the cystovirus φ8.
Merlyn Latimer-Smith, Paula S Salgado, Ismay Forsyth, Eugene Makeyev, Minna M Poranen

Sci Rep· October 2024

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Regulation potential of transcribed simple repeated sequences in developing neurons.
Tek Hong Chung, Anna Zhuravskaya, Eugene V Makeyev

Hum Genet· July 2024

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Alternative splicing coupled to nonsense-mediated decay coordinates downregulation of non-neuronal genes in developing mouse neurons.
Anna Zhuravskaya, Karen Yap, Fursham Hamid, Eugene V Makeyev

Genome Biol· June 2024

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An 840 kb distant upstream enhancer is a crucial regulator of catecholamine-dependent expression of the Bdnf gene in astrocytes.
Annela Avarlaid, Eli-Eelika Esvald, Indrek Koppel, Annabel Parkman, Anna Zhuravskaya, Eugene V Makeyev

Glia· January 2024

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Protocol for auxin-inducible depletion of the RNA-binding protein PTBP1 in mouse embryonic stem cells.
Yaroslav Kainov, Anna Zhuravskaya, Eugene V Makeyev

STAR Protoc· December 2023

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PTBP1-activated co-transcriptional splicing controls epigenetic status of pluripotent stem cells.
Camilla Iannone, Yaroslav Kainov, Anna Zhuravskaya, Fursham Hamid, Takayuki Nojima, Eugene V Makeyev

Mol Cell· January 2023

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Cytoplasmic pool of U1 spliceosome protein SNRNP70 shapes the axonal transcriptome and regulates motor connectivity.
Nikolas Nikolaou, Patricia M Gordon, Fursham Hamid, Richard Taylor, Joshua Lloyd-Jones, Eugene V Makeyev

Curr Biol· December 2022

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Prematurely terminated intron-retaining mRNAs invade axons in SFPQ null-driven neurodegeneration and are a hallmark of ALS.
Richard Taylor, Fursham Hamid, Triona Fielding, Patricia M Gordon, Megan Maloney, Eugene V Makeyev

Nat Commun· November 2022

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Functional Annotation of Custom Transcriptomes.
Fursham Hamid, Kaur Alasoo, Jaak Vilo, Eugene Makeyev

Methods Mol Biol· July 2022

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Analysis of RNA-containing compartments by hybridization and proximity labeling in cultured human cells.
Karen Yap, Tek Hong Chung, Eugene V Makeyev

STAR Protoc· March 2022

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Hybridization-proximity labeling reveals spatially ordered interactions of nuclear RNA compartments.
Karen Yap, Tek Hong Chung, Eugene V Makeyev

Mol Cell· January 2022

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A conserved role for the ALS-linked splicing factor SFPQ in repression of pathogenic cryptic last exons.
Patricia M Gordon, Fursham Hamid, Eugene V Makeyev, Corinne Houart

Nat Commun· March 2021

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Intronic enhancer region governs transcript-specific expression in rodent neurons.
Jürgen Tuvikene, Eli-Eelika Esvald, Annika Rähni, Kaie Uustalu, Anna Zhuravskaya, Eugene V Makeyev

Elife· February 2021

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Delineating the Rules for Structural Adaptation of Membrane-Associated Proteins to Evolutionary Changes in Membrane Lipidome.
Maria Makarova, Maria Peter, Gabor Balogh, Attila Glatz, James I MacRae, Eugene Makeyev

Curr Biol· February 2020

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Tuba8 Drives Differentiation of Cortical Radial Glia into Apical Intermediate Progenitors by Tuning Modifications of Tubulin C Termini.
Susana I Ramos, Eugene V Makeyev, Marcelo Salierno, Takashi Kodama, Yasuhiko Kawakami

Dev Cell· February 2020

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A transcriptome-wide antitermination mechanism sustaining identity of embryonic stem cells.
Yaroslav A Kainov, Eugene V Makeyev

Nat Commun· January 2020

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Differential Homeostasis of Sessile and Pendant Epithelium Reconstituted in a 3D-Printed "GeminiChip".
Pingqiang Cai, Zhuyun Li, Ela Sachyani Keneth, Luying Wang, Changjin Wan, Eugene V Makeyev

Adv Mater· July 2019

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A Short Tandem Repeat-Enriched RNA Assembles a Nuclear Compartment to Control Alternative Splicing and Promote Cell Survival.
Karen Yap, Svetlana Mukhina, Gen Zhang, Jason S C Tan, Hong Sheng Ong, Eugene V Makeyev

Mol Cell· November 2018

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Mutant Muscle LIM Protein C58G causes cardiomyopathy through protein depletion.
Mehroz Ehsan, Matthew Kelly, Charlotte Hooper, Arash Yavari, Julia Beglov, Eugene Makeyev

J Mol Cell Cardiol· August 2018

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A mechanism underlying position-specific regulation of alternative splicing.
Fursham M Hamid, Eugene V Makeyev

Nucleic Acids Res· December 2017

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Alternative exon definition events control the choice between nuclear retention and cytoplasmic export of U11/U12-65K mRNA.
Jens Verbeeren, Bhupendra Verma, Elina H Niemelä, Karen Yap, Eugene V Makeyev

PLoS Genet· May 2017

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