Publications by authors named "Eugene Muratov"

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Challenges of broad-spectrum antiviral drug discovery and development for emerging pathogens.
Holli-Joi Martin, Jon-Michael Beasley, Enes Kelestemur, Zoe Sessions, Stephan Ludwig, Eugene N Muratov

Drug Discov Today· November 2025

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Dona Flor and her two husbands: Discovery of novel HDAC6/AKT2 inhibitors for myeloid cancer treatment.
Karoline B Waitman, Holli-Joi Martin, Jorge A E G Carlos, Rodolpho C Braga, Vinícius A M Souza, Eugene N Muratov

Comput Biol Med· October 2025

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Conserved Filovirus Proteins as Targets of Broad-Spectrum Antivirals.
Marcus Tullius Scotti, Enes Kelestemur, Holli-Joi Martin, Brandon Novy, Cleber C Melo-Filho, Eugene N Muratov

bioRxiv· September 2025

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Chemical arsenal for helicase Hunters: Striking the toughest targets in antiviral research.
Holli-Joi Martin, Mohammad Anwar Hossain, James Wellnitz, Enes Kelestemur, Joshua E Hochuli, Eugene N Muratov

Antiviral Res· July 2025

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Breaking the Phalanx: Overcoming Bacterial Drug Resistance with Quorum Sensing Inhibitors that Enhance Therapeutic Activity of Antibiotics.
Jon-Michael Beasley, Dorjbal Dorjsuren, Sankalp Jain, Marielle Rath, Ricardo Scheufen Tieghi, Eugene Muratov

bioRxiv· June 2025

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On the importance of data curation for knowledge mining in antiviral research.
Holli-Joi Martin, Cleber C Melo-Filho, Alexey V Zakharov, Eugene Muratov, Alexander Tropsha

Sci Prog· May 2025

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DeTox: an Alternative to Animal Testing for Predicting Developmental Toxicity Potential.
Ricardo Scheufen Tieghi, Marielle Rath, José Teófilo Moreira-Filho, James Wellnitz, Holli-Joi Martin, Eugene N Muratov

Environ Health Perspect· May 2025

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External Validation of STopTox - Novel Alternative Method (NAM) for Acute Systemic and Topical Toxicity.
Ricardo Scheufen Tieghi, Cleber C Melo-Filho, Holli-Joi Martin, José Teófilo Moreira-Filho, Tripp LaPratt, Eugene N Muratov

Environ Health Perspect· May 2025

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Adaptive Machine Learning Framework enables Unprecedented Yield and Purity of Adeno-Associated Viral Vectors for Gene Therapy.
Kelvin P Idanwekhai, Shriarjun Shastry, Arianna Minzoni, Morgan R Hurst, Eduardo Barbieri, Eugene N Muratov

bioRxiv· May 2025

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Meta-analysis and review of in silico methods in drug discovery - part 1: technological evolution and trends from big data to chemical space.
Arife Uzundurukan, Mark Nelson, Christopher Teske, Mohamed Shahidul Islam, Elzagheid Mohamed, Eugene Muratov

Pharmacogenomics J· April 2025

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AI-driven discovery of synergistic drug combinations against pancreatic cancer.
Mohsen Pourmousa, Sankalp Jain, Elena Barnaeva, Wengong Jin, Joshua Hochuli, Eugene N Muratov

Nat Commun· April 2025

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One size does not fit all: revising traditional paradigms for assessing accuracy of QSAR models used for virtual screening.
James Wellnitz, Sankalp Jain, Joshua E Hochuli, Travis Maxfield, Eugene N Muratov

J Cheminform· January 2025

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Dona Flor and her two husbands: Discovery of novel HDAC6/AKT2 inhibitors for myeloid cancer treatment.
Karoline B Waitman, Holli-Joi Martin, Jorge A E G Carlos, Rodolpho C Braga, Vinícius A M Souza, Eugene N Muratov

bioRxiv· December 2024

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Deep Multitask Learning-Driven Discovery of New Compounds Targeting .
Eder Soares de Almeida Santos, Jade Milhomem Lemos, Alexandra Maria Dos Santos Carvalho, Felipe da Silva Mendonça de Melo, Eufrasia de Sousa Pereira, Eugene N Muratov

ACS Omega· December 2024

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A Novel Machine Learning Model and a Web Portal for Predicting the Human Skin Sensitization Effects of Chemical Agents.
Ricardo Scheufen Tieghi, José Teófilo Moreira-Filho, Holli-Joi Martin, James Wellnitz, Miguel Canamary Otoch, Eugene N Muratov

Toxics· November 2024

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Heli-SMACC: Helicase-targeting SMAll Molecule Compound Collection.
Holli-Joi Martin, Mohammad A Hossain, James Wellnitz, Enes Kelestemur, Joshua E Hochuli, Eugene Muratov

bioRxiv· July 2024

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STOPLIGHT: A Hit Scoring Calculator.
James Wellnitz, Holli-Joi Martin, Mohammad Anwar Hossain, Marielle Rath, Colton Fox, Eugene N Muratov

J Chem Inf Model· June 2024

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Modeling interactions between Heparan sulfate and proteins based on the Heparan sulfate microarray analysis.
Cleber C Melo-Filho, Guowei Su, Kevin Liu, Eugene N Muratov, Alexander Tropsha

Glycobiology· May 2024

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Pharmacokinetics Profiler (PhaKinPro): Model Development, Validation, and Implementation as a Web Tool for Triaging Compounds with Undesired Pharmacokinetics Profiles.
Marielle Rath, James Wellnitz, Holli-Joi Martin, Cleber Melo-Filho, Joshua E Hochuli, Eugene N Muratov

J Med Chem· April 2024

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Cheminformatics-Guided Cell-Free Exploration of Peptide Natural Products.
Jarrett M Pelton, Joshua E Hochuli, Patric W Sadecki, Takayuki Katoh, Hiroaki Suga, Eugene N Muratov

J Am Chem Soc· March 2024

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ExEmPLAR (Extracting, Exploring, and Embedding Pathways Leading to Actionable Research): a user-friendly interface for knowledge graph mining.
Jon-Michael T Beasley, Daniel R Korn, Nyssa N Tucker, Erick T M Alves, Eugene N Muratov

Bioinformatics· January 2024

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Praemonitus praemunitus: can we forecast and prepare for future viral disease outbreaks?
Zoe Sessions, Tesia Bobrowski, Holli-Joi Martin, Jon-Michael T Beasley, Aneri Kothari, Eugene N Muratov

FEMS Microbiol Rev· September 2023

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Lies and Liabilities: Computational Assessment of High-Throughput Screening Hits to Identify Artifact Compounds.
Vinicius M Alves, Adam Yasgar, James Wellnitz, Ganesha Rai, Marielle Rath, Eugene N Muratov

J Med Chem· September 2023

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Cheminformatics-driven discovery of hit compounds against spp.
Amanda Alves de Oliveira, Lívia do Carmo Silva, Bruno Junior Neves, Vinícius Alexandre Fiaia Costa, Eugene N Muratov

Future Med Chem· September 2023

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Multitask learning-driven identification of novel antitrypanosomal compounds.
Jade Milhomem Lemos, Meryck Felipe Brito da Silva, Alexandra Maria Dos Santos Carvalho, Henric Pietro Vicente Gil, Vinícius Alexandre Fiaia Costa, Eugene N Muratov

Future Med Chem· August 2023

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