Publications by authors named "Eva Collakova"

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Identification of novel candidate genes for regulating oil composition in soybean seeds under environmental stresses.
Patrick Bewick, Peter Forstner, Bo Zhang, Eva Collakova

Front Plant Sci· April 2025

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Elicitor-induced plant immunity relies on amino acids accumulation to delay the onset of bacterial virulence.
Xiaomu Zhang, Philip J Tubergen, Israel D K Agorsor, Pramod Khadka, Connor Tembe, Eva Collakova

Plant Physiol· May 2023

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Lambda-PCR for precise DNA assembly and modification.
Imen Tanniche, Amanda K Fisher, Frank Gillam, Eva Collakova, Chenming Zhang

Biotechnol Bioeng· December 2022

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Detailed characterization of the UMAMIT proteins provides insight into their evolution, amino acid transport properties, and role in the plant.
Chengsong Zhao, Réjane Pratelli, Shi Yu, Brett Shelley, Eva Collakova

J Exp Bot· September 2021

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Increased Expression of UMAMIT Amino Acid Transporters Results in Activation of Salicylic Acid Dependent Stress Response.
Julien Besnard, Unnati Sonawala, Bal Maharjan, Eva Collakova, Scott A Finlayson

Front Plant Sci· January 2021

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Poison ivy hairy root cultures enable a stable transformation system suitable for detailed investigation of urushiol metabolism.
Aneirin A Lott, Catherine P Freed, Christopher C Dickinson, Susan R Whitehead, Eva Collakova

Plant Direct· August 2020

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Characterizing metabolic stress-induced phenotypes of PCC6803 with Raman spectroscopy.
Imen Tanniche, Eva Collakova, Cynthia Denbow, Ryan S Senger

PeerJ· March 2020

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Characterizing glucose, illumination, and nitrogen-deprivation phenotypes of PCC6803 with Raman spectroscopy.
Imen Tanniche, Eva Collakova, Cynthia Denbow, Ryan S Senger

PeerJ· March 2020

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Accession-Level Differentiation of Urushiol Levels, and Identification of Cardanols in Nascent Emerged Poison Ivy Seedlings.
Aneirin A Lott, Emily R Baklajian, Christopher C Dickinson, Eva Collakova, John G Jelesko

Molecules· November 2019

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Comparative Metabolomics of Early Development of the Parasitic Plants and .
Kristen Clermont, Yaxin Wang, Siming Liu, Zhenzhen Yang, Claude W dePamphilis, Eva Collakova

Metabolites· June 2019

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MALDI-MS Imaging of Urushiols in Poison Ivy Stem.
Mina Aziz, Drew Sturtevant, Jordan Winston, Eva Collakova, John G Jelesko

Molecules· April 2017

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UMAMIT14 is an amino acid exporter involved in phloem unloading in Arabidopsis roots.
Julien Besnard, Réjane Pratelli, Chengsong Zhao, Unnati Sonawala, Eva Collakova

J Exp Bot· December 2016

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A Machine Learning Approach to Predict Gene Regulatory Networks in Seed Development in Arabidopsis.
Ying Ni, Delasa Aghamirzaie, Haitham Elmarakeby, Eva Collakova, Song Li

Front Plant Sci· December 2016

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CoSpliceNet: a framework for co-splicing network inference from transcriptomics data.
Delasa Aghamirzaie, Eva Collakova, Song Li, Ruth Grene

BMC Genomics· October 2016

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Potential targets of VIVIPAROUS1/ABI3-LIKE1 (VAL1) repression in developing Arabidopsis thaliana embryos.
Andrew Schneider, Delasa Aghamirzaie, Haitham Elmarakeby, Arati N Poudel, Abraham J Koo, Eva Collakova

Plant J· January 2016

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Transcriptome-wide functional characterization reveals novel relationships among differentially expressed transcripts in developing soybean embryos.
Delasa Aghamirzaie, Dhruv Batra, Lenwood S Heath, Andrew Schneider, Ruth Grene, Eva Collakova

BMC Genomics· November 2015

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Characterization of the inositol monophosphatase gene family in Arabidopsis.
Aida Nourbakhsh, Eva Collakova, Glenda E Gillaspy

Front Plant Sci· January 2015

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Near-real-time analysis of the phenotypic responses of Escherichia coli to 1-butanol exposure using Raman Spectroscopy.
Theresah N K Zu, Ahmad I M Athamneh, Robert S Wallace, Eva Collakova, Ryan S Senger

J Bacteriol· December 2014

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Changes in RNA Splicing in Developing Soybean (Glycine max) Embryos.
Delasa Aghamirzaie, Mahdi Nabiyouni, Yihui Fang, Curtis Klumas, Lenwood S Heath, Eva Collakova

Biology (Basel)· November 2013

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Metabolic and Transcriptional Reprogramming in Developing Soybean (Glycine max) Embryos.
Eva Collakova, Delasa Aghamirzaie, Yihui Fang, Curtis Klumas, Farzaneh Tabataba

Metabolites· May 2013

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Evidence for extensive heterotrophic metabolism, antioxidant action, and associated regulatory events during winter hardening in Sitka spruce.
Eva Collakova, Curtis Klumas, Haktan Suren, Elijah Myers, Lenwood S Heath

BMC Plant Biol· April 2013

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Mining and visualization of microarray and metabolomic data reveal extensive cell wall remodeling during winter hardening in Sitka spruce (Picea sitchensis).
Ruth Grene, Curtis Klumas, Haktan Suren, Kuan Yang, Eva Collakova

Front Plant Sci· November 2012

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Are we ready for genome-scale modeling in plants?
Eva Collakova, Jiun Y Yen, Ryan S Senger

Plant Sci· August 2012

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Arabidopsis 10-formyl tetrahydrofolate deformylases are essential for photorespiration.
Eva Collakova, Aymeric Goyer, Valeria Naponelli, Inga Krassovskaya, Jesse F Gregory

Plant Cell· July 2008

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Functional characterization of a methionine gamma-lyase in Arabidopsis and its implication in an alternative to the reverse trans-sulfuration pathway.
Aymeric Goyer, Eva Collakova, Yair Shachar-Hill, Andrew D Hanson

Plant Cell Physiol· February 2007

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