Publications by authors named "Fanny Perraudeau"

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CALDERA: finding all significant de Bruijn subgraphs for bacterial GWAS.
Hector Roux de Bézieux, Leandro Lima, Fanny Perraudeau, Arnaud Mary, Sandrine Dudoit

Bioinformatics· June 2022

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FiberGrowth Pipeline: A Framework Toward Predicting Fiber-Specific Growth From Human Gut Bacteroidetes Genomes.
Bénédicte Colnet, Christian M K Sieber, Fanny Perraudeau, Marion Leclerc

Front Microbiol· October 2021

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Comparative Analysis of Patient-Matched PDOs Revealed a Reduction in OLFM4-Associated Clusters in Metastatic Lesions in Colorectal Cancer.
Takuya Okamoto, David duVerle, Katsuyuki Yaginuma, Yasuko Natsume, Hitomi Yamanaka, Fanny Perraudeau

Stem Cell Reports· April 2021

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Medical Food Assessment Using a Smartphone App With Continuous Glucose Monitoring Sensors: Proof-of-Concept Study.
Hector Roux de Bézieux, James Bullard, Orville Kolterman, Michael Souza, Fanny Perraudeau

JMIR Form Res· March 2021

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Improvements to postprandial glucose control in subjects with type 2 diabetes: a multicenter, double blind, randomized placebo-controlled trial of a novel probiotic formulation.
Fanny Perraudeau, Paul McMurdie, James Bullard, Andrew Cheng, Colleen Cutcliffe

BMJ Open Diabetes Res Care· July 2020

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Publisher Correction: A general and flexible method for signal extraction from single-cell RNA-seq data.
Davide Risso, Fanny Perraudeau, Svetlana Gribkova, Sandrine Dudoit, Jean-Philippe Vert

Nat Commun· February 2019

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Observation weights unlock bulk RNA-seq tools for zero inflation and single-cell applications.
Koen Van den Berge, Fanny Perraudeau, Charlotte Soneson, Michael I Love, Davide Risso

Genome Biol· February 2018

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A general and flexible method for signal extraction from single-cell RNA-seq data.
Davide Risso, Fanny Perraudeau, Svetlana Gribkova, Sandrine Dudoit, Jean-Philippe Vert

Nat Commun· January 2018

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Bioconductor workflow for single-cell RNA sequencing: Normalization, dimensionality reduction, clustering, and lineage inference.
Fanny Perraudeau, Davide Risso, Kelly Street, Elizabeth Purdom, Sandrine Dudoit

F1000Res· July 2017

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Genomic sequencing reveals historical, demographic and selective factors associated with the diversification of the fire-associated fungus Neurospora discreta.
Pierre Gladieux, Benjamin A Wilson, Fanny Perraudeau, Liliam A Montoya, David Kowbel

Mol Ecol· November 2015

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Identification of Allorecognition Loci in Neurospora crassa by Genomics and Evolutionary Approaches.
Jiuhai Zhao, Pierre Gladieux, Elizabeth Hutchison, Joanna Bueche, Charles Hall, Fanny Perraudeau

Mol Biol Evol· September 2015

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