Publications by authors named "Farshid Mohammad-Rafiee"

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Growth of nonmotile stress-responsive bacteria in 3D colonies under confining pressure.
Samaneh Rahbar, Farshid Mohammad-Rafiee, Ludger Santen, Reza Shaebani

Biophys J· March 2025

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Role of particle local curvature in cellular wrapping.
Amir Khosravanizadeh, Pierre Sens, Farshid Mohammad-Rafiee

J R Soc Interface· November 2022

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Theoretical study of RNA-polymerase behavior considering the backtracking state.
Razieh Kor, Farshid Mohammad-Rafiee

Soft Matter· August 2022

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The characteristics of nuclear membrane fluctuations in stem cells.
Sedigheh Ghanbarzadeh Nodehi, G V Shivashankar, Jacques Prost, Farshid Mohammad-Rafiee

J R Soc Interface· March 2021

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Insight into the unwrapping of the dinucleosome.
Fatemeh Khodabandeh, Hashem Fatemi, Farshid Mohammad-Rafiee

Soft Matter· May 2020

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Influence of cross-linking and retrograde flow on formation and dynamics of lamellipodium.
Asal Atakhani, Farshid Mohammad-Rafiee, Azam Gholami

PLoS One· December 2019

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Wrapping of a nanowire by a supported lipid membrane.
Amir Khosravanizadeh, Pierre Sens, Farshid Mohammad-Rafiee

Soft Matter· September 2019

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Effects of dielectric inhomogeneity on electrostatic twist rigidity of a helical biomolecule in Debye-Hückel regime.
Amir Rezaie-Dereshgi, Farshid Mohammad-Rafiee

J Chem Phys· April 2018

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Modelling of Dictyostelium discoideum movement in a linear gradient of chemoattractant.
Zahra Eidi, Farshid Mohammad-Rafiee, Mohammad Khorrami, Azam Gholami

Soft Matter· November 2017

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Modeling of ribosome dynamics on a ds-mRNA under an external load.
Bahareh Shakiba, Maryam Dayeri, Farshid Mohammad-Rafiee

J Chem Phys· July 2016

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Elastic model for dinucleosome structure and energy.
Hashem Fatemi, Fatemeh Khodabandeh, Farshid Mohammad-Rafiee

Phys Rev E· April 2016

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Regulation of the membrane wrapping transition of a cylindrical target by cytoskeleton adhesion.
Seyed Mahmoud Hashemi, Pierre Sens, Farshid Mohammad-Rafiee

J R Soc Interface· November 2014

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DNA conformation and energy in nucleosome core: a theoretical approach.
Davood Norouzi, Farshid Mohammad-Rafiee

J Biomol Struct Dyn· July 2014

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Distribution of counterions and interaction between two similarly charged dielectric slabs: roles of charge discreteness and dielectric inhomogeneity.
Weria Pezeshkian, Narges Nikoofard, Davood Norouzi, Farshid Mohammad-Rafiee, Hossein Fazli

Phys Rev E Stat Nonlin Soft Matter Phys· June 2012

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Nucleosome dynamics between tension-induced states.
Laleh Mollazadeh-Beidokhti, Farshid Mohammad-Rafiee, Helmut Schiessel

Biophys J· May 2012

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Geometrical correlations in the nucleosomal DNA conformation and the role of the covalent bonds rigidity.
Maryam Ghorbani, Farshid Mohammad-Rafiee

Nucleic Acids Res· March 2011

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Active nucleosome displacement: a theoretical approach.
Laleh Mollazadeh-Beidokhti, Farshid Mohammad-Rafiee, Helmut Schiessel

Biophys J· June 2009

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Twist-stretch correlation of DNA.
Maryam Ghorbani, Farshid Mohammad-Rafiee

Phys Rev E Stat Nonlin Soft Matter Phys· December 2008

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Effect of bending anisotropy on the 3D conformation of short DNA loops.
Davood Norouzi, Farshid Mohammad-Rafiee, Ramin Golestanian

Phys Rev Lett· October 2008

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Elastic correlations in nucleosomal DNA structure.
Farshid Mohammad-Rafiee, Ramin Golestanian

Phys Rev Lett· June 2005

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Theory of nucleosome corkscrew sliding in the presence of synthetic DNA ligands.
Farshid Mohammad-Rafiee, Igor M Kulić, Helmut Schiessel

J Mol Biol· November 2004

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Electrostatic contribution to twist rigidity of DNA.
Farshid Mohammad-Rafiee, Ramin Golestanian

Phys Rev E Stat Nonlin Soft Matter Phys· June 2004

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