Publications by authors named "Felipe Leprevost"

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Precision proteogenomics reveals pan-cancer impact of germline variants.
Fernanda Martins Rodrigues, Nadezhda V Terekhanova, Kathleen J Imbach, Karl R Clauser, Myvizhi Esai Selvan, Felipe da Veiga Leprevost

Cell· May 2025

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Analysis of isobaric quantitative proteomic data using TMT-Integrator and FragPipe computational platform.
Hui-Yin Chang, Yamei Deng, Ruohong Li, Dmitry Avtonomov, Bo Wen, Felipe da Veiga Leprevost

bioRxiv· May 2025

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Comprehensive proteogenomic characterization of rare kidney tumors.
Ginny Xiaohe Li, Lijun Chen, Yi Hsiao, Rahul Mannan, Yuping Zhang, Felipe da Veiga Leprevost

Cell Rep Med· May 2024

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Autoinhibited kinesin-1 adopts a hierarchical folding pattern.
Zhenyu Tan, Yang Yue, Felipe Leprevost, Sarah Haynes, Venkatesha Basrur

Elife· November 2023

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Identification of LMAN1 and SURF4 dependent secretory cargoes.
Vi T Tang, Prabhodh S Abbineni, Felipe da Veiga Leprevost, Venkatesha Basrur, Brian T Emmer

bioRxiv· April 2023

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Histopathologic and proteogenomic heterogeneity reveals features of clear cell renal cell carcinoma aggressiveness.
Yize Li, Tung-Shing M Lih, Saravana M Dhanasekaran, Rahul Mannan, Lijun Chen, Felipe da Veiga Leprevost

Cancer Cell· January 2023

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PTM-Shepherd: Analysis and Summarization of Post-Translational and Chemical Modifications From Open Search Results.
Daniel J Geiszler, Andy T Kong, Dmitry M Avtonomov, Fengchao Yu, Felipe da Veiga Leprevost

Mol Cell Proteomics· March 2022

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Deep Proteomics Using Two Dimensional Data Independent Acquisition Mass Spectrometry.
Kyung-Cho Cho, David J Clark, Michael Schnaubelt, Guo Ci Teo, Felipe da Veiga Leprevost

Anal Chem· March 2020

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Unveiling the partners of the DRBD2-mRNP complex, an RBP in Trypanosoma cruzi and ortholog to the yeast SR-protein Gbp2.
Helisa Helena Wippel, Juliane Soldi Malgarin, Alexandre Haruo Inoue, Felipe da Veiga Leprevost, Paulo Costa Carvalho

BMC Microbiol· June 2019

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A multi-protease, multi-dissociation, bottom-up-to-top-down proteomic view of the Loxosceles intermedia venom.
Dilza Trevisan-Silva, Aline V Bednaski, Juliana S G Fischer, Silvio S Veiga, Nuno Bandeira, Felipe V Leprevost

Sci Data· July 2017

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MSFragger: ultrafast and comprehensive peptide identification in mass spectrometry-based proteomics.
Andy T Kong, Felipe V Leprevost, Dmitry M Avtonomov, Dattatreya Mellacheruvu, Alexey I Nesvizhskii

Nat Methods· May 2017

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Quantitative proteomic analysis of the Saccharomyces cerevisiae industrial strains CAT-1 and PE-2.
Renata M Santos, Fabio C S Nogueira, Aline A Brasil, Paulo C Carvalho, Felipe V Leprevost

J Proteomics· January 2017

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Ten Simple Rules for Taking Advantage of Git and GitHub.
Yasset Perez-Riverol, Laurent Gatto, Rui Wang, Timo Sachsenberg, Julian Uszkoreit, Felipe da Veiga Leprevost

PLoS Comput Biol· July 2016

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Venomous extract protein profile of Brazilian tarantula Grammostola iheringi: searching for potential biotechnological applications.
Marcia H Borges, Suely G Figueiredo, Felipe V Leprevost, Maria Elena De Lima, Marta do N Cordeiro

J Proteomics· March 2016

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Integrated analysis of shotgun proteomic data with PatternLab for proteomics 4.0.
Paulo C Carvalho, Diogo B Lima, Felipe V Leprevost, Marlon D M Santos, Juliana S G Fischer

Nat Protoc· January 2016

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Reevaluating the Trypanosoma cruzi proteomic map: The shotgun description of bloodstream trypomastigotes.
Giselle Villa Flor Brunoro, Marcelle Almeida Caminha, André Teixeira da Silva Ferreira, Felipe da Veiga Leprevost, Paulo Costa Carvalho

J Proteomics· February 2015

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Proteome analysis of formalin-fixed paraffin-embedded tissues from a primary gastric melanoma and its meningeal metastasis: a case report.
Juliana de S da G Fischer, Nathalie H S Canedo, Katia Maria da S Goncalves, Leila Maria Cardao Chimelli, Monique Franca, Felipe V Leprevost

Curr Top Med Chem· October 2014

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PepExplorer: a similarity-driven tool for analyzing de novo sequencing results.
Felipe V Leprevost, Richard H Valente, Diogo B Lima, Jonas Perales, Rafael Melani

Mol Cell Proteomics· September 2014

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On best practices in the development of bioinformatics software.
Felipe da Veiga Leprevost, Valmir C Barbosa, Eduardo L Francisco, Yasset Perez-Riverol, Paulo C Carvalho

Front Genet· July 2014

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Computational proteomics pitfalls and challenges: HavanaBioinfo 2012 workshop report.
Yasset Perez-Riverol, Henning Hermjakob, Oliver Kohlbacher, Lennart Martens, David Creasy, Felipe Leprevost

J Proteomics· July 2013

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