Publications by authors named "Felix Martinez-Rios"

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StarPepWeb: an integrative, graph-based resource for bioactive peptides.
Christian López, Roberto Cárdenas, Longendri Aguilera-Mendoza, Guillermin Agüero-Chapin, Félix Martínez-Rios

Bioinform Adv· December 2025

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Half-Space Proximal Networks (HSPNs): A Proxy for Multi-Query Similarity Searching Models Predicting Tumor-Homing Peptides.
Maylin Romero, Yovani Marrero-Ponce, Felix Martinez-Rios, Guillermin Agüero-Chapin, Longendri Aguilera-Mendoza

ACS Omega· November 2025

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Macromolecular interaction mechanism of the bacteriocin EntDD14 with the receptor binding domain (RBD) for the inhibition of SARS-CoV-2 and the JN.1 variant: Biomedical study based on elastic networks, stochastic Markov models, and macromolecular volumetric analysis.
Luis Moncayo Molina, María Erlinda Aguaiza Pichazaca, José Isidro Yamasqui Padilla, María Eufemia Pinos Calle, Karla Maribel Yamasqui Pinos, Felix Martinez-Rios

Biophys Chem· March 2025

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In Silico Identification of Potential Clovibactin-like Antibiotics Binding to Unique Cell Wall Precursors in Diverse Gram-Positive Bacterial Strains.
Olimpo Sierra-Hernandez, Oscar Saurith-Coronell, Juan Rodríguez-Macías, Edgar Márquez, José Ramón Mora, Felix Martinez-Rios

Int J Mol Sci· February 2025

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Unraveling the hemolytic toxicity tapestry of peptides using chemical space complex networks.
Kevin Castillo-Mendieta, Guillermin Agüero-Chapin, José R Mora, Noel Pérez, Ernesto Contreras-Torres, Felix Martinez-Rios

Toxicol Sci· December 2024

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Biological Implications of the Intrinsic Deformability of Human Acetylcholinesterase Induced by Diverse Compounds: A Computational Study.
Ysaías J Alvarado, Lenin González-Paz, José L Paz, Marcos A Loroño-González, Julio Santiago Contreras, Felix Martinez-Rios

Biology (Basel)· December 2024

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Innovative Alignment-Based Method for Antiviral Peptide Prediction.
Daniela de Llano García, Yovani Marrero-Ponce, Guillermin Agüero-Chapin, Francesc J Ferri, Agostinho Antunes, Felix Martinez-Rios

Antibiotics (Basel)· August 2024

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Rethinking the applicability domain analysis in QSAR models.
Jose R Mora, Edgar A Marquez, Noel Pérez-Pérez, Ernesto Contreras-Torres, Yunierkis Perez-Castillo, Felix Martinez-Rios

J Comput Aided Mol Des· February 2024

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Biophysical Analysis of Potential Inhibitors of SARS-CoV-2 Cell Recognition and Their Effect on Viral Dynamics in Different Cell Types: A Computational Prediction from In Vitro Experimental Data.
Lenin González-Paz, Carla Lossada, María Laura Hurtado-León, Joan Vera-Villalobos, José L Paz, Felix Martinez-Rios

ACS Omega· February 2024

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StarPep Toolbox: an open-source software to assist chemical space analysis of bioactive peptides and their functions using complex networks.
Longendri Aguilera-Mendoza, Sebastián Ayala-Ruano, Felix Martinez-Rios, Edgar Chavez, César R García-Jacas

Bioinformatics· August 2023

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Complex Networks Analyses of Antibiofilm Peptides: An Emerging Tool for Next-Generation Antimicrobials' Discovery.
Guillermin Agüero-Chapin, Agostinho Antunes, José R Mora, Noel Pérez, Ernesto Contreras-Torres, Felix Martinez-Rios

Antibiotics (Basel)· April 2023

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Handcrafted versus non-handcrafted (self-supervised) features for the classification of antimicrobial peptides: complementary or redundant?
César R García-Jacas, Luis A García-González, Felix Martinez-Rios, Issac P Tapia-Contreras, Carlos A Brizuela

Brief Bioinform· November 2022

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A Novel Network Science and Similarity-Searching-Based Approach for Discovering Potential Tumor-Homing Peptides from Antimicrobials.
Maylin Romero, Yovani Marrero-Ponce, Hortensia Rodríguez, Guillermin Agüero-Chapin, Agostinho Antunes, Felix Martinez-Rios

Antibiotics (Basel)· March 2022

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Distributed and multicore QuBiLS-MIDAS software v2.0: Computing chiral, fuzzy, weighted and truncated geometrical molecular descriptors based on tensor algebra.
César R García-Jacas, Yovani Marrero-Ponce, Ricardo Vivas-Reyes, José Suárez-Lezcano, Felix Martinez-Rios

J Comput Chem· May 2020

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Smoothed Spherical Truncation based on Fuzzy Membership Functions: Application to the Molecular Encoding.
César R García-Jacas, Yovani Marrero-Ponce, Carlos A Brizuela, José Suárez-Lezcano, Felix Martinez-Rios

J Comput Chem· January 2020

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Enhancing Acute Oral Toxicity Predictions by using Consensus Modeling and Algebraic Form-Based 0D-to-2D Molecular Encodes.
César R García-Jacas, Yovani Marrero-Ponce, Fernando Cortés-Guzmán, José Suárez-Lezcano, Felix O Martinez-Rios

Chem Res Toxicol· June 2019

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