Publications by authors named "Fengfeng Zhou"

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PepHarmony: a multi-view contrastive learning framework for integrated sequence and structure-based peptide representation.
Ruochi Zhang, Haoran Wu, Chang Liu, Huaping Li, Yuqian Wu, Fengfeng Zhou

Neural Netw· February 2026

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OCm7G: An interpretable one-class predictor for m7G methylation sites trained with limit negative samples.
Fei Li, Jinbang Qin, Zhaomin Yao, Yiping Xu, Yabing Zhu, Fengfeng Zhou

Genomics· December 2025

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MolProphecy: Bridging medicinal chemists' knowledge and molecular pre-trained models via a multi-modal framework.
Jianping Zhao, Qiong Zhou, Tian Wang, Yusi Fan, Qian Yang, Fengfeng Zhou

J Adv Res· October 2025

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Reliable Multimodal Cancer Survival Prediction with Confidence-aware Risk Modeling.
Xuping Xie, Ye Wang, Ziqi Zhao, Qixing Yang, Lan Huang, Fengfeng Zhou

IEEE J Biomed Health Inform· September 2025

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A Dynamic Multi-Scale Hypergraph Learning Framework Driven by Features and Structures for ceRNA-Disease Association Prediction.
Xin-Fei Wang, Lan Huang, Yan Wang, Ren-Chu Guan, Zhu-Hong You, Feng-Feng Zhou

IEEE J Biomed Health Inform· August 2025

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PepLand: a large-scale pre-trained peptide representation model for a comprehensive landscape of both canonical and non-canonical amino acids.
Ruochi Zhang, Haoran Wu, Chang Liu, Qian Yang, Yuting Xiu, Fengfeng Zhou

Brief Bioinform· July 2025

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Role of Cr(VI) in the efficient removal of Cd(II) from aqueous solutions using FeS in a Cd(II)/Cr(VI) binary system.
Yaxin Qin, Fengfeng Zhou, Chao Wang, Wei Liu

Environ Res· June 2025

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Noise-Consistent Hypergraph Autoencoder Based on Contrastive Learning for Cancer ceRNA Association Prediction in Complex Biological Regulatory Networks.
Xin-Fei Wang, Lan Huang, Yan Wang, Ren-Chu Guan, Zhu-Hong You, Feng-Feng Zhou

J Chem Inf Model· June 2025

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Arginine-Mediated Liver Immune Regulation and Antioxidant Defense in Largemouth Bass (): Multi-Omics Insights into Metabolic Remodeling During Infection.
Yu-Long Sun, Shuai-Liang Zhang, Feng-Feng Zhou, Yuan-Xin Qian, Yang He

Antioxidants (Basel)· June 2025

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AMPCliff: Quantitative definition and benchmarking of activity cliffs in antimicrobial peptides.
Kewei Li, Yuqian Wu, Yinheng Li, Yutong Guo, Yanwen Kong, Fengfeng Zhou

J Adv Res· May 2025

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GraCEImpute: A novel graph clustering autoencoder approach for imputation of single-cell RNA-seq data.
Yueying Wang, Kewei Li, Ruochi Zhang, Yusi Fan, Lan Huang, Fengfeng Zhou

Comput Biol Med· January 2025

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CuS enabled efficient Fenton-like oxidation of phenylarsonic acid and inorganic arsenic immobilization.
Wei Liu, Fengfeng Zhou, Huan Yang, Yunxiao Shi, Yaxin Qin

J Hazard Mater· December 2024

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TExCNN: Leveraging Pre-Trained Models to Predict Gene Expression from Genomic Sequences.
Guohao Dong, Yuqian Wu, Lan Huang, Fei Li, Fengfeng Zhou

Genes (Basel)· December 2024

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Arginine alleviates LPS-induced leukocytes inflammation and apoptosis via adjusted NODs signaling.
Yuan-Xin Qian, Feng-Feng Zhou, Qiang Chen, Fen Dong, Han-Ying Xu

Fish Shellfish Immunol· November 2024

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GANSamples-ac4C: Enhancing ac4C site prediction via generative adversarial networks and transfer learning.
Fei Li, Jiale Zhang, Kewei Li, Yu Peng, Haotian Zhang, Fengfeng Zhou

Anal Biochem· June 2024

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Machine Learning-Based Integrated Multiomics Characterization of Colorectal Cancer Reveals Distinctive Metabolic Signatures.
Ran Zheng, Rui Su, Yusi Fan, Fan Xing, Keke Huang, Fengfeng Zhou

Anal Chem· May 2024

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A probabilistic knowledge graph for target identification.
Chang Liu, Kaimin Xiao, Cuinan Yu, Yipin Lei, Kangbo Lyu, Fengfeng Zhou

PLoS Comput Biol· April 2024

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MolFeSCue: enhancing molecular property prediction in data-limited and imbalanced contexts using few-shot and contrastive learning.
Ruochi Zhang, Chao Wu, Qian Yang, Chang Liu, Yan Wang, Fengfeng Zhou

Bioinformatics· March 2024

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Generating the Transcriptional Regulation View of Transcriptomic Features for Prediction Task and Dark Biomarker Detection on Small Datasets.
Kewei Li, Yusi Fan, Yaqing Liu, Hongmei Liu, Gongyou Zhang, Fengfeng Zhou

J Vis Exp· March 2024

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ACPPfel: Explainable deep ensemble learning for anticancer peptides prediction based on feature optimization.
Mingyou Liu, Tao Wu, Xue Li, Yingxue Zhu, Sen Chen, Fengfeng Zhou

Front Genet· February 2024

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Undifferentially Expressed CXXC5 as a Transcriptionally Regulatory Biomarker of Breast Cancer.
Xue Li, Xiaoying Lv, Haijun Li, Gongyou Zhang, Yaohang Long, Fengfeng Zhou

Adv Biol (Weinh)· December 2023

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Multi-view progression diagnosis of thyroid cancer by integrating platelet transcriptomes and blood routine tests.
Yi Lai, Dong Xu, Kewei Li, Lin Song, Yiming Chen, Fengfeng Zhou, Jiaqing Zhou

Comput Biol Med· December 2023

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Computational Characterization of Undifferentially Expressed Genes with Altered Transcription Regulation in Lung Cancer.
Ruihao Xin, Qian Cheng, Xiaohang Chi, Xin Feng, Hang Zhang, Fengfeng Zhou

Genes (Basel)· December 2023

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Reconstructing the cytokine view for the multi-view prediction of COVID-19 mortality.
Yueying Wang, Zhao Wang, Yaqing Liu, Qiong Yu, Yujia Liu, Fengfeng Zhou

BMC Infect Dis· September 2023

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Orchestrating information across tissues via a novel multitask GAT framework to improve quantitative gene regulation relation modeling for survival analysis.
Meiyu Duan, Yueying Wang, Dong Zhao, Hongmei Liu, Gongyou Zhang, Fengfeng Zhou

Brief Bioinform· July 2023

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