Publications by authors named "Fernaldo Winnerdy"

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Interlocking G-Quadruplexes Using a G-Triad•G Connection: Implications for G-Wire Assembly.
Abhishek Singh, Fernaldo Richtia Winnerdy, Constanza Avendaño Avila, Claude Nogues, Anh Tuân Phan

J Am Chem Soc· September 2024

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Functional and Promiscuity Studies of Three-Residue Cyclophane Forming Enzymes Show Nonnative C-C Cross-Linked Products and Leader-Dependent Cyclization.
Angelica Faith L Suarez, Thi Quynh Ngoc Nguyen, Litao Chang, Yi Wei Tooh, Rubin How Sheng Yong, Fernaldo R Winnerdy

ACS Chem Biol· March 2024

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RNA is a key component of extracellular DNA networks in Pseudomonas aeruginosa biofilms.
Sudarsan Mugunthan, Lan Li Wong, Fernaldo Richtia Winnerdy, Stephen Summers, Muhammad Hafiz Bin Ismail

Nat Commun· November 2023

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Stitched peptides as potential cell permeable inhibitors of oncogenic DAXX protein.
Clare Jelinska, Srinivasaraghavan Kannan, Yuri Frosi, Siti Radhiah Ramlan, Fernaldo Winnerdy

RSC Chem Biol· November 2023

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Stable bulged G-quadruplexes in the human genome: identification, experimental validation and functionalization.
Csaba Papp, Vineeth T Mukundan, Piroon Jenjaroenpun, Fernaldo Richtia Winnerdy, Ghim Siong Ow

Nucleic Acids Res· May 2023

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Crystal structures of an HIV-1 integrase aptamer: Formation of a water-mediated A•G•G•G•G pentad in an interlocked G-quadruplex.
Khac Huy Ngo, Chong Wai Liew, Simon Lattmann, Fernaldo Richtia Winnerdy, Anh Tuân Phan

Biochem Biophys Res Commun· July 2022

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Four-Layered Intramolecular Parallel G-Quadruplex with Non-Nucleotide Loops: An Ultra-Stable Self-Folded DNA Nano-Scaffold.
Gitali Devi, Fernaldo Richtia Winnerdy, Jason Cheng Yu Ang, Kah Wai Lim, Anh Tuân Phan

ACS Nano· January 2022

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Duplexes Formed by GC Repeats Contain Alternate Slow- and Fast-Flipping G·G Base Pairs.
Arijit Maity, Fernaldo Richtia Winnerdy, Gang Chen, Anh Tuân Phan

Biochemistry· April 2021

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Unprecedented hour-long residence time of a cation in a left-handed G-quadruplex.
Fernaldo Richtia Winnerdy, Blaž Bakalar, Poulomi Das, Brahim Heddi, Adrien Marchand

Chem Sci· April 2021

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A novel minimal motif for left-handed G-quadruplex formation.
Poulomi Das, Fernaldo Richtia Winnerdy, Arijit Maity, Yves Mechulam, Anh Tuân Phan

Chem Commun (Camb)· March 2021

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The biofilm matrix scaffold of Pseudomonas aeruginosa contains G-quadruplex extracellular DNA structures.
Thomas Seviour, Fernaldo Richtia Winnerdy, Lan Li Wong, Xiangyan Shi, Sudarsan Mugunthan

NPJ Biofilms Microbiomes· March 2021

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Bulges in left-handed G-quadruplexes.
Poulomi Das, Khac Huy Ngo, Fernaldo Richtia Winnerdy, Arijit Maity, Blaž Bakalar

Nucleic Acids Res· February 2021

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Post-translational formation of strained cyclophanes in bacteria.
Thi Quynh Ngoc Nguyen, Yi Wei Tooh, Ryosuke Sugiyama, Thi Phuong Diep Nguyen, Mugilarasi Purushothaman, Fernaldo R Winnerdy

Nat Chem· November 2020

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Coexistence of two quadruplex-duplex hybrids in the PIM1 gene.
Derrick J Y Tan, Fernaldo Richtia Winnerdy, Kah Wai Lim, Anh Tuân Phan

Nucleic Acids Res· November 2020

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Guanine anchoring: a strategy for specific targeting of a G-quadruplex using short PNA, LNA and DNA molecules.
Derrick Jing Yang Tan, Poulomi Das, Fernaldo Richtia Winnerdy, Kah Wai Lim, Anh Tuân Phan

Chem Commun (Camb)· June 2020

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Extracellular protein isolation from the matrix of anammox biofilm using ionic liquid extraction.
Lan Li Wong, Gayathri Natarajan, Marissa Boleij, Sara Swi Thi, Fernaldo Richtia Winnerdy

Appl Microbiol Biotechnol· April 2020

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Intra-locked G-quadruplex structures formed by irregular DNA G-rich motifs.
Arijit Maity, Fernaldo Richtia Winnerdy, Weili Denyse Chang, Gang Chen, Anh Tuân Phan

Nucleic Acids Res· April 2020

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Cytosine epigenetic modification modulates the formation of an unprecedented G4 structure in the WNT1 promoter.
Zi-Fu Wang, Ming-Hao Li, I-Te Chu, Fernaldo R Winnerdy, Anh T Phan

Nucleic Acids Res· February 2020

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Solution Structures of a G-Quadruplex Bound to Linear- and Cyclic-Dinucleotides.
Fernaldo Richtia Winnerdy, Poulomi Das, Brahim Heddi, Anh Tuân Phan

J Am Chem Soc· November 2019

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NMR solution and X-ray crystal structures of a DNA molecule containing both right- and left-handed parallel-stranded G-quadruplexes.
Fernaldo Richtia Winnerdy, Blaž Bakalar, Arijit Maity, J Jeya Vandana, Yves Mechulam

Nucleic Acids Res· September 2019

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An Unprecedented Knot-like G-Quadruplex Peripheral Motif.
Thi Hong Anh Truong, Fernaldo Richtia Winnerdy, Anh Tuân Phan

Angew Chem Int Ed Engl· September 2019

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Bright G-Quadruplex Nanostructures Functionalized with Porphyrin Lanterns.
Pravin Pathak, Wei Yao, Katherine Delaney Hook, Ryan Vik, Fernaldo Richtia Winnerdy

J Am Chem Soc· August 2019

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Structure of a (3+1) hybrid G-quadruplex in the PARP1 promoter.
Anjali Sengar, J Jeya Vandana, Vicki S Chambers, Marco Di Antonio, Fernaldo Richtia Winnerdy

Nucleic Acids Res· February 2019

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Analysis of Interactions between Telomeric i-Motif DNA and a Cyclic Tetraoxazole Compound.
Shadi Sedghi Masoud, Yudai Yamaoki, Yue Ma, Adrien Marchand, Fernaldo Richtia Winnerdy

Chembiochem· November 2018

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A Catalytic and Selective Scissoring Molecular Tool for Quadruplex Nucleic Acids.
Matteo Nadai, Filippo Doria, Matteo Scalabrin, Valentina Pirota, Vincenzo Grande, Fernaldo Richtia Winnerdy

J Am Chem Soc· November 2018

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