Publications by authors named "Fernando Antoneli"

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SARS-CoV-2 reshapes mA methylation in long noncoding RNAs of human lung cells.
Cristina M Peter, Caio O Cyrino, Nilmar S Moretti, Fernando Antoneli, Marcelo R S Briones

NAR Mol Med· October 2025

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Homeostasis in input-output networks: Structure, Classification and Applications.
Fernando Antoneli, Martin Golubitsky, Jiaxin Jin, Ian Stewart

Math Biosci· June 2025

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Statistical Distributions of Genome Assemblies Reveal Random Effects in Ancient Viral DNA Reconstructions.
Fernando Antoneli, Cristina M Peter, Marcelo R S Briones

Viruses· January 2025

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Mitochondrial genome variants associated with amyotrophic lateral sclerosis and their haplogroup distribution.
Marcelo R S Briones, João H Campos, Renata C Ferreira, Lisa Schneper, Ilda M Santos, Fernando M Antoneli

Muscle Nerve· October 2024

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The Relationship between HERV, Interleukin, and Transcription Factor Expression in ZIKV Infected versus Uninfected Trophoblastic Cells.
Anderson Luís da Costa, Paula Prieto-Oliveira, Márcia Duarte-Barbosa, Robert Andreata-Santos, Cristina M Peter, Fernando Antoneli

Cells· September 2024

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Homeostasis in networks with multiple inputs.
João Luiz de Oliveira Madeira, Fernando Antoneli

J Math Biol· June 2024

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Reconstructing Prehistoric Viral Genomes from Neanderthal Sequencing Data.
Renata C Ferreira, Gustavo V Alves, Marcello Ramon, Fernando Antoneli, Marcelo R S Briones

Viruses· May 2024

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Whole-genome analysis of monozygotic Brazilian twins discordant for type 1 narcolepsy: a case report.
João H C Campos, Ana C R Aguilar, Fernando Antoneli, Giselle Truzzi, Marcelo R S Briones

BMC Neurol· November 2022

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The epitranscriptome of Vero cells infected with SARS-CoV-2 assessed by direct RNA sequencing reveals m6A pattern changes and DRACH motif biases in viral and cellular RNAs.
João H C Campos, Gustavo V Alves, Juliana T Maricato, Carla T Braconi, Fernando M Antoneli

Front Cell Infect Microbiol· September 2022

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Direct RNA Sequencing Reveals SARS-CoV-2 m6A Sites and Possible Differential DRACH Motif Methylation among Variants.
João H C Campos, Juliana T Maricato, Carla T Braconi, Fernando Antoneli, Luiz Mario R Janini

Viruses· October 2021

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The structure of infinitesimal homeostasis in input-output networks.
Yangyang Wang, Zhengyuan Huang, Fernando Antoneli, Martin Golubitsky

J Math Biol· May 2021

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Comparative Analysis of the Secretome and Interactome of and Reveals Species Specific Immune Response Modulating Proteins.
Renata Watanabe Costa, Marina Ferreira Batista, Isabela Meneghelli, Ramon Oliveira Vidal, Carlos Alcides Nájera, Fernando Antoneli

Front Immunol· April 2021

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Stochastic Modeling and Simulation of Viral Evolution.
Luiza Guimarães Fabreti, Diogo Castro, Bruno Gorzoni, Luiz Mario Ramos Janini, Fernando Antoneli

Bull Math Biol· April 2019

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Homeostasis in a feed forward loop gene regulatory motif.
Fernando Antoneli, Martin Golubitsky, Ian Stewart

J Theor Biol· May 2018

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A Kolmogorov-Smirnov test for the molecular clock based on Bayesian ensembles of phylogenies.
Fernando Antoneli, Fernando M Passos, Luciano R Lopes, Marcelo R S Briones

PLoS One· February 2018

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A model of gene expression based on random dynamical systems reveals modularity properties of gene regulatory networks.
Fernando Antoneli, Renata C Ferreira, Marcelo R S Briones

Math Biosci· June 2016

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HIV-1 Tropism Determines Different Mutation Profiles in Proviral DNA.
Sieberth Nascimento-Brito, Jean Paulo Zukurov, Juliana T Maricato, Angela C Volpini, Anna Christina M Salim, Fernando Antoneli

PLoS One· May 2016

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Estimation of genetic diversity in viral populations from next generation sequencing data with extremely deep coverage.
Jean P Zukurov, Sieberth do Nascimento-Brito, Angela C Volpini, Guilherme C Oliveira, Luiz Mario R Janini, Fernando Antoneli

Algorithms Mol Biol· March 2016

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Protein Synthesis Driven by Dynamical Stochastic Transcription.
Guilherme C P Innocentini, Michael Forger, Ovidiu Radulescu, Fernando Antoneli

Bull Math Biol· January 2016

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MIA: Mutual Information Analyzer, a graphic user interface program that calculates entropy, vertical and horizontal mutual information of molecular sequence sets.
Flavio Lichtenstein, Fernando Antoneli, Marcelo R S Briones

BMC Bioinformatics· December 2015

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The hidden factors in impact factors: a perspective from Brazilian science.
Renata C Ferreira, Fernando Antoneli, Marcelo R S Briones

Front Genet· July 2013

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Virus replication as a phenotypic version of polynucleotide evolution.
Fernando Antoneli, Francisco Bosco, Diogo Castro, Luiz Mario Janini

Bull Math Biol· April 2013

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