Publications by authors named "Filip Lankas"

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Correction to "Sequence-Dependent Shape and Stiffness of DNA and RNA Double Helices: Hexanucleotide Scale and Beyond".
Pavlína Slavníková, Marek Cuker, Eva Matoušková, Ivan Čmelo, Marie Zgarbová

J Chem Inf Model· October 2025

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Sequence-Dependent Shape and Stiffness of DNA and RNA Double Helices: Hexanucleotide Scale and Beyond.
Pavlína Slavníková, Marek Cuker, Eva Matoušková, Ivan Čmelo, Marie Zgarbová

J Chem Inf Model· September 2025

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RNA kink-turns are highly anisotropic with respect to lateral displacement of the flanking stems.
Eva Matoušková, Tomáš Dršata, Lucie Pfeiferová, Jiří Šponer, Kamila Réblová

Biophys J· July 2025

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Temperature-dependent elasticity of DNA, RNA, and hybrid double helices.
Hana Dohnalová, Eva Matoušková, Filip Lankaš

Biophys J· March 2024

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Temperature-Dependent Twist of Double-Stranded RNA Probed by Magnetic Tweezer Experiments and Molecular Dynamics Simulations.
Hana Dohnalová, Mona Seifert, Eva Matoušková, Misha Klein, Flávia S Papini

J Phys Chem B· January 2024

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RNA kink-turns are highly anisotropic with respect to lateral displacement of the flanking stems.
Eva Matoušková, Tomáš Dršata, Lucie Pfeifferová, Jiří Šponer, Kamila Réblová

Biophys J· March 2022

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Impact of the Nucleosome Histone Core on the Structure and Dynamics of DNA-Containing Pyrimidine-Pyrimidone (6-4) Photoproduct.
Eva Matoušková, Emmanuelle Bignon, Victor E P Claerbout, Tomáš Dršata, Natacha Gillet

J Chem Theory Comput· September 2020

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Simple, but Not Too Simple: Modeling the Dynamics of DNA and RNA Buckling.
Filip Lankaš

Biophys J· April 2020

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Compensatory Mechanisms in Temperature Dependence of DNA Double Helical Structure: Bending and Elongation.
Hana Dohnalová, Tomáš Dršata, Jiří Šponer, Martin Zacharias, Jan Lipfert

J Chem Theory Comput· April 2020

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The temperature dependence of the helical twist of DNA.
Franziska Kriegel, Christian Matek, Tomáš Dršata, Klara Kulenkampff, Sophie Tschirpke

Nucleic Acids Res· September 2018

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rRNA C-Loops: Mechanical Properties of a Recurrent Structural Motif.
Tomáš Dršata, Kamila Réblová, Ivana Beššeová, Jiří Šponer, Filip Lankaš

J Chem Theory Comput· July 2017

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Interstrand cross-linking implies contrasting structural consequences for DNA: insights from molecular dynamics.
Emmanuelle Bignon, Tomáš Dršata, Christophe Morell, Filip Lankaš, Elise Dumont

Nucleic Acids Res· February 2017

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Influence of BII Backbone Substates on DNA Twist: A Unified View and Comparison of Simulation and Experiment for All 136 Distinct Tetranucleotide Sequences.
Marie Zgarbová, Petr Jurečka, Filip Lankaš, Thomas E Cheatham, Jiří Šponer

J Chem Inf Model· February 2017

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Long-timescale dynamics of the Drew-Dickerson dodecamer.
Pablo D Dans, Linda Danilāne, Ivan Ivani, Tomáš Dršata, Filip Lankaš

Nucleic Acids Res· May 2016

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On the Use of Molecular Dynamics Simulations for Probing Allostery through DNA.
Tomáš Dršata, Marie Zgarbová, Petr Jurečka, Jiří Šponer, Filip Lankaš

Biophys J· February 2016

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Explaining the striking difference in twist-stretch coupling between DNA and RNA: A comparative molecular dynamics analysis.
Korbinian Liebl, Tomas Drsata, Filip Lankas, Jan Lipfert, Martin Zacharias

Nucleic Acids Res· December 2015

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Multiscale modelling of DNA mechanics.
Tomáš Dršata, Filip Lankaš

J Phys Condens Matter· August 2015

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Insights into the structure of intrastrand cross-link DNA lesion-containing oligonucleotides: G[8-5m]T and G[8-5]C from molecular dynamics simulations.
Elise Dumont, Tomáš Dršata, Célia Fonseca Guerra, Filip Lankaš

Biochemistry· February 2015

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Effect O6-guanine alkylation on DNA flexibility studied by comparative molecular dynamics simulations.
Mahmut Kara, Tomas Drsata, Filip Lankas, Martin Zacharias

Biopolymers· January 2015

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Mechanical Model of DNA Allostery.
Tomáš Dršata, Marie Zgarbová, Naďa Špačková, Petr Jurečka, Jiří Šponer

J Phys Chem Lett· November 2014

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μABC: a systematic microsecond molecular dynamics study of tetranucleotide sequence effects in B-DNA.
Marco Pasi, John H Maddocks, David Beveridge, Thomas C Bishop, David A Case, Filip Lankas

Nucleic Acids Res· October 2014

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Base Pair Fraying in Molecular Dynamics Simulations of DNA and RNA.
Marie Zgarbová, Michal Otyepka, Jiří Šponer, Filip Lankaš, Petr Jurečka

J Chem Theory Comput· August 2014

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Mechanical properties of symmetric and asymmetric DNA A-tracts: implications for looping and nucleosome positioning.
Tomáš Dršata, Nada Špačková, Petr Jurečka, Marie Zgarbová, Jiří Šponer

Nucleic Acids Res· June 2014

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Structure, dynamics, and interactions of a C4'-oxidized abasic site in DNA: a concomitant strand scission reverses affinities.
Chandan Patel, Tomàš Dršata, Filip Lankaš, Elise Dumont

Biochemistry· November 2013

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Effect of 8-oxoguanine on DNA structure and deformability.
Tomáš Dršata, Mahmut Kara, Martin Zacharias, Filip Lankaš

J Phys Chem B· October 2013

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