Publications by authors named "Filip Pattyn"

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Unraveling and resolving inefficient glucolipid biosurfactants production through quantitative multiomics analyses of Starmerella bombicola strains.
Sofie Lodens, Sophie L K W Roelants, Katarzyna Ciesielska, Robin Geys, Evelien Derynck, Filip Pattyn

Biotechnol Bioeng· February 2020

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An Ontology to Standardize Research Output of Nutritional Epidemiology: From Paper-Based Standards to Linked Content.
Chen Yang, Henry Ambayo, Bernard De Baets, Patrick Kolsteren, Nattapon Thanintorn, Filip Pattyn

Nutrients· June 2019

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Cost-effective and robust genotyping using double-mismatch allele-specific quantitative PCR.
Steve Lefever, Ali Rihani, Joni Van der Meulen, Filip Pattyn, Tom Van Maerken

Sci Rep· February 2019

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High-throughput PCR assay design for targeted resequencing using primerXL.
Steve Lefever, Filip Pattyn, Bram De Wilde, Frauke Coppieters, Sarah De Keulenaer

BMC Bioinformatics· September 2017

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Effective Alu repeat based RT-Qpcr normalization in cancer cell perturbation experiments.
Ali Rihani, Tom Van Maerken, Filip Pattyn, Gert Van Peer, Anneleen Beckers

PLoS One· April 2014

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Single-nucleotide polymorphisms and other mismatches reduce performance of quantitative PCR assays.
Steve Lefever, Filip Pattyn, Jan Hellemans, Jo Vandesompele

Clin Chem· October 2013

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Focal DNA copy number changes in neuroblastoma target MYCN regulated genes.
Candy Kumps, Annelies Fieuw, Pieter Mestdagh, Björn Menten, Steve Lefever, Filip Pattyn

PLoS One· July 2013

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MYCN and HDAC2 cooperate to repress miR-183 signaling in neuroblastoma.
Marco Lodrini, Ina Oehme, Christina Schroeder, Till Milde, Marie C Schier, Filip Pattyn

Nucleic Acids Res· July 2013

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Targeted expression of mutated ALK induces neuroblastoma in transgenic mice.
Lukas C Heukamp, Theresa Thor, Alexander Schramm, Katleen De Preter, Candy Kumps, Filip Pattyn

Sci Transl Med· July 2012

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Dickkopf-3 is regulated by the MYCN-induced miR-17-92 cluster in neuroblastoma.
Sara De Brouwer, Pieter Mestdagh, Irina Lambertz, Filip Pattyn, Anne De Paepe

Int J Cancer· June 2012

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Identification of a novel recurrent 1q42.2-1qter deletion in high risk MYCN single copy 11q deleted neuroblastomas.
Annelies Fieuw, Candy Kumps, Alexander Schramm, Filip Pattyn, Björn Menten

Int J Cancer· June 2012

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Massively parallel sequencing for early molecular diagnosis in Leber congenital amaurosis.
Frauke Coppieters, Bram De Wilde, Steve Lefever, Ellen De Meester, Nina De Rocker, Filip Pattyn

Genet Med· June 2012

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Molecular diagnostics for congenital hearing loss including 15 deafness genes using a next generation sequencing platform.
Sarah De Keulenaer, Jan Hellemans, Steve Lefever, Jean-Pierre Renard, Joachim De Schrijver, Filip Pattyn

BMC Med Genomics· May 2012

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Practical tools to implement massive parallel pyrosequencing of PCR products in next generation molecular diagnostics.
Kim De Leeneer, Joachim De Schrijver, Lieven Clement, Machteld Baetens, Steve Lefever, Filip Pattyn

PLoS One· January 2012

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The microRNA body map: dissecting microRNA function through integrative genomics.
Pieter Mestdagh, Steve Lefever, Filip Pattyn, Dana Ridzon, Erik Fredlund

Nucleic Acids Res· November 2011

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Analysing 454 amplicon resequencing experiments using the modular and database oriented Variant Identification Pipeline.
Joachim M De Schrijver, Kim De Leeneer, Steve Lefever, Nick Sabbe, Filip Pattyn

BMC Bioinformatics· May 2010

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methGraph: a genome visualization tool for PCR-based methylation assays.
Steve Lefever, Jasmien Hoebeeck, Filip Pattyn, Gábor Tusnády, Anne De Paepe

Epigenetics· February 2010

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External oligonucleotide standards enable cross laboratory comparison and exchange of real-time quantitative PCR data.
Joëlle Vermeulen, Filip Pattyn, Katleen De Preter, Liesbeth Vercruysse, Stefaan Derveaux

Nucleic Acids Res· November 2009

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RNA pre-amplification enables large-scale RT-qPCR gene-expression studies on limiting sample amounts.
Joëlle Vermeulen, Stefaan Derveaux, Steve Lefever, Els De Smet, Katleen De Preter, Filip Pattyn

BMC Res Notes· November 2009

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The emerging molecular pathogenesis of neuroblastoma: implications for improved risk assessment and targeted therapy.
Nadine Van Roy, Katleen De Preter, Jasmien Hoebeeck, Tom Van Maerken, Filip Pattyn

Genome Med· July 2009

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Meta-mining of neuroblastoma and neuroblast gene expression profiles reveals candidate therapeutic compounds.
Katleen De Preter, Sara De Brouwer, Tom Van Maerken, Filip Pattyn, Alexander Schramm

Clin Cancer Res· June 2009

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Disease-causing 7.4 kb cis-regulatory deletion disrupting conserved non-coding sequences and their interaction with the FOXL2 promotor: implications for mutation screening.
Barbara D'haene, Catia Attanasio, Diane Beysen, Josée Dostie, Edmond Lemire, Filip Pattyn

PLoS Genet· June 2009

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RDML: structured language and reporting guidelines for real-time quantitative PCR data.
Steve Lefever, Jan Hellemans, Filip Pattyn, Daniel R Przybylski, Chris Taylor

Nucleic Acids Res· April 2009

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RTPrimerDB: the portal for real-time PCR primers and probes.
Steve Lefever, Jo Vandesompele, Frank Speleman, Filip Pattyn

Nucleic Acids Res· January 2009

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Distinct transcriptional MYCN/c-MYC activities are associated with spontaneous regression or malignant progression in neuroblastomas.
Frank Westermann, Daniel Muth, Axel Benner, Tobias Bauer, Kai-Oliver Henrich, Filip Pattyn

Genome Biol· October 2008

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