Publications by authors named "Francesco Gregoretti"

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A human CAGinSTEM platform for decoding HTT repeats' somatic instability links CAG interruption to HD pathology in neurons.
Martina Zobel, Gianluca Damaggio, Maria Lidia Mignogna, Dario Besusso, Davide Scalzo, Francesco Gregoretti

Cell Rep· December 2025

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Segmentation, 3D Reconstruction, and Analysis of PcG Proteins in Fluorescence Microscopy Images in Different Cell Culture Conditions.
Francesco Gregoretti, Federica Lucini, Elisa Cesarini, Gennaro Oliva, Chiara Lanzuolo

Methods Mol Biol· May 2023

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An Algorithm for the Analysis of the 3D Spatial Organization of the Genome.
Francesco Gregoretti, Alice Cortesi, Gennaro Oliva, Beatrice Bodega, Laura Antonelli

Methods Mol Biol· March 2021

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MLL4-associated condensates counterbalance Polycomb-mediated nuclear mechanical stress in Kabuki syndrome.
Alessandra Fasciani, Sarah D'Annunzio, Vittoria Poli, Luca Fagnocchi, Sven Beyes, Francesco Gregoretti

Nat Genet· December 2020

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SAMMY-seq reveals early alteration of heterochromatin and deregulation of bivalent genes in Hutchinson-Gilford Progeria Syndrome.
Endre Sebestyén, Fabrizia Marullo, Federica Lucini, Cristiano Petrini, Andrea Bianchi, Francesco Gregoretti

Nat Commun· December 2020

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Dysfunctional polycomb transcriptional repression contributes to lamin A/C-dependent muscular dystrophy.
Andrea Bianchi, Chiara Mozzetta, Gloria Pegoli, Federica Lucini, Sara Valsoni, Francesco Gregoretti

J Clin Invest· May 2020

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Alterations of redox and iron metabolism accompany the development of HIV latency.
Iart Luca Shytaj, Bojana Lucic, Mattia Forcato, Carlotta Penzo, James Billingsley, Francesco Gregoretti

EMBO J· May 2020

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4q-D4Z4 chromatin architecture regulates the transcription of muscle atrophic genes in facioscapulohumeral muscular dystrophy.
Alice Cortesi, Matthieu Pesant, Shruti Sinha, Federica Marasca, Eleonora Sala, Francesco Gregoretti

Genome Res· June 2019

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An Automatic Segmentation Method Combining an Active Contour Model and a Classification Technique for Detecting Polycomb-group Proteinsin High-Throughput Microscopy Images.
Francesco Gregoretti, Elisa Cesarini, Chiara Lanzuolo, Gennaro Oliva, Laura Antonelli

Methods Mol Biol· January 2018

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Lamin A/C sustains PcG protein architecture, maintaining transcriptional repression at target genes.
Elisa Cesarini, Chiara Mozzetta, Fabrizia Marullo, Francesco Gregoretti, Annagiusi Gargiulo

J Cell Biol· November 2015

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Mantra 2.0: an online collaborative resource for drug mode of action and repurposing by network analysis.
Diego Carrella, Francesco Napolitano, Rossella Rispoli, Mario Miglietta, Annamaria Carissimo, Francesco Gregoretti

Bioinformatics· June 2014

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Reverse engineering and analysis of genome-wide gene regulatory networks from gene expression profiles using high-performance computing.
Vincenzo Belcastro, Francesco Gregoretti, Velia Siciliano, Michele Santoro, Giovanni D'Angelo

IEEE/ACM Trans Comput Biol Bioinform· September 2012

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Transcriptional gene network inference from a massive dataset elucidates transcriptome organization and gene function.
Vincenzo Belcastro, Velia Siciliano, Francesco Gregoretti, Pratibha Mithbaokar, Gopuraja Dharmalingam

Nucleic Acids Res· November 2011

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A parallel implementation of the network identification by multiple regression (NIR) algorithm to reverse-engineer regulatory gene networks.
Francesco Gregoretti, Vincenzo Belcastro, Diego di Bernardo, Gennaro Oliva

PLoS One· April 2010

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