Publications by authors named "Franci Merzel"

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Mechanistic insight into the dynamics of Mur ligase through a comprehensive timescale-specific approach.
Iza Ogris, Barbara Zupančič, Izidor Sosič, Franci Merzel, Simona Golič Grdadolnik

Commun Chem· September 2025

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Cryo-EM structures of a protein pore reveal a cluster of cholesterol molecules and diverse roles of membrane lipids.
Gašper Šolinc, Marija Srnko, Franci Merzel, Ana Crnković, Mirijam Kozorog

Nat Commun· March 2025

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Synthesis of Thiazolidin-4-Ones Derivatives, Evaluation of Conformation in Solution, Theoretical Isomerization Reaction Paths and Discovery of Potential Biological Targets.
Nikitas Georgiou, Danai Karta, Antigoni Cheilari, Franci Merzel, Demeter Tzeli

Molecules· May 2024

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From structural polymorphism to structural metamorphosis of the coat protein of flexuous filamentous potato virus Y.
Luka Kavčič, Andreja Kežar, Neža Koritnik, Magda Tušek Žnidarič, Tajda Klobučar, Franci Merzel

Commun Chem· January 2024

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Sub-THz acoustic excitation of protein motion.
Petra Papež, Franci Merzel, Matej Praprotnik

J Chem Phys· October 2023

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Surface plasmon resonance and microscale thermophoresis approaches for determining the affinity of perforin for calcium ions.
Omar Naneh, Mirijam Kozorog, Franci Merzel, Robert Gilbert, Gregor Anderluh

Front Immunol· August 2023

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Rotational Dynamics of a Protein under Shear Flow Studied by the Eckart Frame Formalism.
Petra Papež, Franci Merzel, Matej Praprotnik

J Phys Chem B· August 2023

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Water-Aluminum Interaction as Driving Force of Linde Type A Aluminophosphate Hydration.
Anže Hubman, Janez Volavšek, Tomaž Urbič, Nataša Zabukovec Logar, Franci Merzel

Nanomaterials (Basel)· August 2023

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Influence of SGLT1 Sugar Uptake Inhibitors on Water Transport.
Marko Sever, Franci Merzel

Molecules· July 2023

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Collective Domain Motion Facilitates Water Transport in SGLT1.
Marko Sever, Franci Merzel

Int J Mol Sci· June 2023

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Expansion and Neofunctionalization of Actinoporin-like Genes in Mediterranean Mussel (Mytilus galloprovincialis).
Neža Koritnik, Marco Gerdol, Gašper Šolinc, Tomaž Švigelj, Simon Caserman, Franci Merzel

Genome Biol Evol· November 2022

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Molecular Dynamics-Derived Pharmacophore Model Explaining the Nonselective Aspect of K10.1 Pore Blockers.
Žan Toplak, Franci Merzel, Luis A Pardo, Lucija Peterlin Mašič, Tihomir Tomašič

Int J Mol Sci· August 2021

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Endogenous modulators of neurotrophin signaling: Landscape of the transient ATP-NGF interactions.
Francesca Paoletti, Franci Merzel, Alberto Cassetta, Iza Ogris, Sonia Covaceuszach

Comput Struct Biotechnol J· May 2021

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Decoupling between the translation and rotation of water in the proximity of a protein molecule.
Pan Tan, Juan Huang, Eugene Mamontov, Victoria García Sakai, Franci Merzel

Phys Chem Chem Phys· August 2020

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Nucleotide-Specific Autoinhibition of Full-Length K-Ras4B Identified by Extensive Conformational Sampling.
Balint Dudas, Franci Merzel, Hyunbum Jang, Ruth Nussinov, David Perahia

Front Mol Biosci· July 2020

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Why do water molecules around small hydrophobic solutes form stronger hydrogen bonds than in the bulk?
Franci Merzel, Franc Avbelj

Biochim Biophys Acta Gen Subj· April 2020

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Structural basis for the multitasking nature of the potato virus Y coat protein.
Andreja Kežar, Luka Kavčič, Martin Polák, Jiří Nováček, Ion Gutiérrez-Aguirre, Franci Merzel

Sci Adv· July 2019

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Evaluation of Selected CYP51A1 Polymorphisms in View of Interactions with Substrate and Redox Partner.
Tadeja Režen, Iza Ogris, Marko Sever, Franci Merzel, Simona Golic Grdadolnik

Front Pharmacol· June 2017

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Origin of hydrophobicity and enhanced water hydrogen bond strength near purely hydrophobic solutes.
Joze Grdadolnik, Franci Merzel, Franc Avbelj

Proc Natl Acad Sci U S A· January 2017

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An efficient synthetic method and theoretical calculations of olmesartan methyl ether: study of biological function of AT1 antagonism.
Dimitrios Ntountaniotis, George Agelis, Amalia Resvani, Maria Halabalaki, George Liapakis, Franci Merzel

Comb Chem High Throughput Screen· April 2015

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A novel synthetic luteinizing hormone-releasing hormone (LHRH) analogue coupled with modified β-cyclodextrin: insight into its intramolecular interactions.
Golfo G Kordopati, Theodore V Tselios, Tahsin Kellici, Franci Merzel, Thomas Mavromoustakos

Biochim Biophys Acta· January 2015

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Polymorphisms of CYP51A1 from cholesterol synthesis: associations with birth weight and maternal lipid levels and impact on CYP51 protein structure.
Monika Lewińska, Urska Zelenko, Franci Merzel, Simona Golic Grdadolnik, Jeffrey C Murray

PLoS One· September 2014

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The amide III vibrational circular dichroism band as a probe to detect conformational preferences of alanine dipeptide in water.
Andreja Mirtič, Franci Merzel, Jože Grdadolnik

Biopolymers· July 2014

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Allostery and conformational dynamics in cAMP-binding acyltransferases.
Marjetka Podobnik, Nida Siddiqui, Katja Rebolj, Subhalaxmi Nambi, Franci Merzel

J Biol Chem· June 2014

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Quantitative structure-activation barrier relationship modeling for Diels-Alder ligations utilizing quantum chemical structural descriptors.
Sisir Nandi, Alessandro Monesi, Viktor Drgan, Franci Merzel, Marjana Novič

Chem Cent J· October 2013

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