Publications by authors named "Frank Collart"

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The lichen symbiosis re-viewed through the genomes of Cladonia grayi and its algal partner Asterochloris glomerata.
Daniele Armaleo, Olaf Müller, François Lutzoni, Ólafur S Andrésson, Guillaume Blanc, Frank R Collart

BMC Genomics· July 2019

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Pseudomonas fluorescens increases mycorrhization and modulates expression of antifungal defense response genes in roots of aspen seedlings.
Shalaka Shinde, Sarah Zerbs, Frank R Collart, Jonathan R Cumming, Philippe Noirot

BMC Plant Biol· January 2019

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Modeling the Sulfur Regulome by Quantifying the Storage and Communication of Information.
Peter E Larsen, Sarah Zerbs, Philip D Laible, Frank R Collart, Peter Korajczyk

mSystems· June 2018

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Transport capabilities of environmental Pseudomonads for sulfur compounds.
Sarah Zerbs, Peter J Korajczyk, Philippe H Noirot, Frank R Collart

Protein Sci· April 2017

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Transportome Is Linked to Strain-Specific Plant Growth Promotion in Aspen Seedlings under Nutrient Stress.
Shalaka Shinde, Jonathan R Cumming, Frank R Collart, Philippe H Noirot, Peter E Larsen

Front Plant Sci· March 2017

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Predicting Ecological Roles in the Rhizosphere Using Metabolome and Transportome Modeling.
Peter E Larsen, Frank R Collart, Yang Dai

PLoS One· May 2016

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Live Cell Discovery of Microbial Vitamin Transport and Enzyme-Cofactor Interactions.
Lindsey N Anderson, Phillip K Koech, Andrew E Plymale, Elizabeth V Landorf, Allan Konopka, Frank R Collart

ACS Chem Biol· February 2016

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Multi-Omics Approach Identifies Molecular Mechanisms of Plant-Fungus Mycorrhizal Interaction.
Peter E Larsen, Avinash Sreedasyam, Geetika Trivedi, Shalaka Desai, Yang Dai, Frank R Collart

Front Plant Sci· February 2016

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Using metabolomic and transportomic modeling and machine learning to identify putative novel therapeutic targets for antibiotic resistant Pseudomonad infections.
Peter E Larsen, Frank R Collart, Yang Dai

Annu Int Conf IEEE Eng Med Biol Soc· October 2015

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Predicting bacterial community assemblages using an artificial neural network approach.
Peter Larsen, Yang Dai, Frank R Collart

Methods Mol Biol· August 2015

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Modeling forest ecosystem responses to elevated carbon dioxide and ozone using artificial neural networks.
Peter E Larsen, Leland J Cseke, R Michael Miller, Frank R Collart

J Theor Biol· October 2014

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Small-scale expression of proteins in E. coli.
Sarah Zerbs, Sarah Giuliani, Frank Collart

Methods Enzymol· August 2014

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Structural and functional characterization of solute binding proteins for aromatic compounds derived from lignin: p-coumaric acid and related aromatic acids.
Kemin Tan, Changsoo Chang, Marianne Cuff, Jerzy Osipiuk, Elizabeth Landorf, Frank R Collart

Proteins· October 2013

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Characterization of transport proteins for aromatic compounds derived from lignin: benzoate derivative binding proteins.
Karolina Michalska, Changsoo Chang, Jamey C Mack, Sarah Zerbs, Andrzej Joachimiak, Frank R Collart

J Mol Biol· November 2012

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Biophysical and structural characterization of a sequence-diverse set of solute-binding proteins for aromatic compounds.
Ruth Pietri, Sarah Zerbs, Danielle M Corgliano, Marc Allaire, Frank R Collart

J Biol Chem· July 2012

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BowStrap v1.0: Assigning statistical significance to expressed genes using short-read transcriptome data.
Peter E Larsen, Frank R Collart

BMC Res Notes· June 2012

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Predicted Relative Metabolomic Turnover (PRMT): determining metabolic turnover from a coastal marine metagenomic dataset.
Peter E Larsen, Frank R Collart, Dawn Field, Folker Meyer, Kevin P Keegan

Microb Inform Exp· June 2011

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Environment sensing and response mediated by ABC transporters.
Sarah E Giuliani, Ashley M Frank, Danielle M Corgliano, Catherine Seifert, Loren Hauser, Frank R Collart

BMC Genomics· June 2011

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Design and initial characterization of the SC-200 proteomics standard mixture.
Andrew Bauman, Roger Higdon, Sean Rapson, Brenton Loiue, Jason Hogan, Frank Collart

OMICS· May 2011

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Using next generation transcriptome sequencing to predict an ectomycorrhizal metabolome.
Peter E Larsen, Avinash Sreedasyam, Geetika Trivedi, Gopi K Podila, Leland J Cseke, Frank R Collart

BMC Syst Biol· May 2011

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Using deep RNA sequencing for the structural annotation of the Laccaria bicolor mycorrhizal transcriptome.
Peter E Larsen, Geetika Trivedi, Avinash Sreedasyam, Vincent Lu, Gopi K Podila, Frank R Collart

PLoS One· July 2010

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Bacterial systems for production of heterologous proteins.
Sarah Zerbs, Ashley M Frank, Frank R Collart

Methods Enzymol· January 2010

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Crystal structures of YkuI and its complex with second messenger cyclic Di-GMP suggest catalytic mechanism of phosphodiester bond cleavage by EAL domains.
George Minasov, Sivaraman Padavattan, Ludmilla Shuvalova, Joseph S Brunzelle, Darcie J Miller, Frank R Collart

J Biol Chem· May 2009

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Genomic reconstruction of Shewanella oneidensis MR-1 metabolism reveals a previously uncharacterized machinery for lactate utilization.
Grigory E Pinchuk, Dmitry A Rodionov, Chen Yang, Xiaoqing Li, Andrei L Osterman, Frank R Collart

Proc Natl Acad Sci U S A· February 2009

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Functional assignment of solute-binding proteins of ABC transporters using a fluorescence-based thermal shift assay.
Sarah E Giuliani, Ashley M Frank, Frank R Collart

Biochemistry· December 2008

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