Publications by authors named "Frederic Cadet"

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Using protein blocks to build custom fragment libraries from protein structures.
Surbhi Dhingra, Stéphane Téletchéa, Ramanathan Sowdhamini, Yves-Henri Sanejouand, Alexandre G de Brevern, Frédéric Cadet

Biochimie· December 2025

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Challenging the paradigm: non-canonical exoprotease cheating in clinical Pseudomonas aeruginosa isolates.
Katya Dafne Guadarrama-Orozco, Diego Armando Esquivel-Hernández, Miguel Ángel Islas-Tolentino, Fohad Mabood Husain, Héctor Quezada, Frederic Cadet

FEMS Microbiol Ecol· October 2025

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Classification of Apricot Varieties by Infrared Spectroscopy and Machine Learning.
Jaume Béjar-Grimalt, David Pérez-Guaita, Ángel Sánchez-Illana, Rodolfo García-Contreras, Rashmi Kataria, Frédéric Cadet

ACS Agric Sci Technol· July 2025

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Reviving the past for a healthier future: ancient molecules and remedies as a solution to the antibiotic crisis.
Miguel Ángel Díaz-Guerrero, Israel Castillo-Juárez, Rimma Zurabian, Alejandra Valdez, Kokila Kota, Frederic Cadet

Future Microbiol· April 2025

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Metabolic Fluxes Using Deep Learning Based on Enzyme Variations: .
Freddy Oulia, Philippe Charton, Ophélie Lo-Thong-Viramoutou, Carlos G Acevedo-Rocha, Wei Liu, Frederic Cadet

Int J Mol Sci· December 2024

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Peptipedia v2.0: a peptide sequence database and user-friendly web platform. A major update.
Gabriel Cabas-Mora, Anamaría Daza, Nicole Soto-García, Valentina Garrido, Diego Alvarez, Frederic Cadet

Database (Oxford)· November 2024

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The mutual and dynamic role of TSPO and ligands in their binding process: An example with PK-11195.
Rajas M Rao, Ibaa El Dhaybi, Frédéric Cadet, Catherine Etchebest, Julien Diharce

Biochimie· September 2024

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Resistance against two lytic phage variants attenuates virulence and antibiotic resistance in .
Juan Carlos García-Cruz, Xareni Rebollar-Juarez, Aldo Limones-Martinez, Cristian Sadalis Santos-Lopez, Shotaro Toya, Frederic Cadet

Front Cell Infect Microbiol· February 2024

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Quality assessment of VH models.
Aravindan Arun Nadaradjane, Julien Diharce, Joseph Rebehmed, Frédéric Cadet, Fabrice Gardebien

J Biomol Struct Dyn· November 2023

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To cheat or not to cheat: cheatable and non-cheatable virulence factors in Pseudomonas aeruginosa.
Katya Dafne Guadarrama-Orozco, Caleb Perez-Gonzalez, Kokila Kota, Miguel Cocotl-Yañez, Jesús Guillermo Jiménez-Cortés, Frederic Cadet

FEMS Microbiol Ecol· October 2023

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Regioselective glucosylation of (+)-catechin using a new variant of sucrose phosphorylase from .
Marie Demonceaux, Marine Goux, Johann Hendrickx, Claude Solleux, Frédéric Cadet

Org Biomol Chem· March 2023

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General Trends of the Antibody VHs Domain Dynamics.
Akhila Melarkode Vattekatte, Julien Diharce, Joseph Rebehmed, Frédéric Cadet, Fabrice Gardebien

Int J Mol Sci· February 2023

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Editorial: Machine learning, epistasis, and protein engineering: From sequence-structure-function relationships to regulation of metabolic pathways.
Frederic Cadet, Emma Saavedra, Per-Olof Syren, Brigitte Gontero

Front Mol Biosci· December 2022

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Learning Strategies in Protein Directed Evolution.
Xavier F Cadet, Jean Christophe Gelly, Aster van Noord, Frédéric Cadet, Carlos G Acevedo-Rocha

Methods Mol Biol· June 2022

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Non-linearity of Metabolic Pathways Critically Influences the Choice of Machine Learning Model.
Ophélie Lo-Thong-Viramoutou, Philippe Charton, Xavier F Cadet, Brigitte Grondin-Perez, Emma Saavedra, Frédéric Cadet

Front Artif Intell· June 2022

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VH Structural Modelling Approaches: A Critical Review.
Poonam Vishwakarma, Akhila Melarkode Vattekatte, Nicolas Shinada, Julien Diharce, Carla Martins, Frédéric Cadet

Int J Mol Sci· March 2022

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Correction to: Learning Strategies in Protein Directed Evolution.
Xavier F Cadet, Jean Christophe Gelly, Aster van Noord, Frédéric Cadet, Carlos G Acevedo-Rocha

Methods Mol Biol· January 2022

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Insights into Comparative Modeling of VH Domains.
Akhila Melarkode Vattekatte, Frédéric Cadet, Jean-Christophe Gelly, Alexandre G de Brevern

Int J Mol Sci· September 2021

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Publisher Correction: A machine learning approach for reliable prediction of amino acid interactions and its application in the directed evolution of enantioselective enzymes.
Frédéric Cadet, Nicolas Fontaine, Guangyue Li, Joaquin Sanchis, Matthieu Ng Fuk Chong

Sci Rep· April 2021

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Machine Learning Enables Selection of Epistatic Enzyme Mutants for Stability Against Unfolding and Detrimental Aggregation.
Guangyue Li, Youcai Qin, Nicolas T Fontaine, Matthieu Ng Fuk Chong, Miguel A Maria-Solano, Xavier F Cadet, Frederic Cadet

Chembiochem· March 2021

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A glance into the evolution of template-free protein structure prediction methodologies.
Surbhi Dhingra, Ramanathan Sowdhamini, Frédéric Cadet, Bernard Offmann

Biochimie· August 2020

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Versatile Dimerisation Process of Translocator Protein (TSPO) Revealed by an Extensive Sampling Based on a Coarse-Grained Dynamics Study.
Rajas Rao, Julien Diharce, Bérénice Dugué, Mariano A Ostuni, Frédéric Cadet

J Chem Inf Model· August 2020

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Identification of flux checkpoints in a metabolic pathway through white-box, grey-box and black-box modeling approaches.
Ophélie Lo-Thong, Philippe Charton, Xavier F Cadet, Brigitte Grondin-Perez, Emma Saavedra, Frédéric Cadet

Sci Rep· August 2020

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Discrete analysis of camelid variable domains: sequences, structures, and in-silico structure prediction.
Akhila Melarkode Vattekatte, Nicolas Ken Shinada, Tarun J Narwani, Floriane Noël, Olivier Bertrand, Frédéric Cadet

PeerJ· March 2020

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Structural variations within proteins can be as large as variations observed across their homologues.
Iyanar Vetrivel, Alexandre G de Brevern, Frédéric Cadet, Narayanaswamy Srinivasan, Bernard Offmann

Biochimie· December 2019

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