Publications by authors named "Frederic Chain"

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Lineage-specific expansions of the Dicer gene family in tardigrades.
Bethany Weinberg, Teresa W Lee, Natalie C Steinel, Frédéric J J Chain

BMC Genomics· October 2025

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Changes in survival, swimming behavior, and stress biomarker expression in Crassostrea virginica larvae in response to exposure to drugs of abuse.
Gustavo Salcedo, Varsha Niroula, Frédéric J J Chain, Jack Lepine, Sheree A Pagsuyoin

Ecotoxicol Environ Saf· September 2025

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Opportunities and considerations for using artificial intelligence in bioinformatics education.
Stephen R Piccolo, Aparna Nathan, Michelle D Brazas, Manoj Kandpal, Aida T Miró-Herrans, Frédéric J J Chain

Bioinform Adv· September 2025

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Strong but diffuse genetic divergence underlies differentiation in an incipient species of marine stickleback.
Alexandra Sumarli, Colby Behrens, Gina Lucas, Michael J Olufemi, Paul Bentzen, Frederic J J Chain

bioRxiv· September 2025

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Environmental transcriptomics under heat stress: Can environmental RNA reveal changes in gene expression of aquatic organisms?
Robert M Hechler, Matthew C Yates, Frédéric J J Chain, Melania E Cristescu

Mol Ecol· July 2025

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Roles and Future Opportunities for Genomic Architecture in Understanding Repeated Evolution.
Riley Kellermeyer, David Alvarez-Ponce, Javier Arsuaga, Frédéric J J Chain, Megan Y Dennis

Integr Comp Biol· July 2025

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Limited Migration From Physiological Refugia Constrains the Rescue of Native Gastropods Facing an Invasive Predator.
Mathilde Salamon, Louis Astorg, Antoine Paccard, Frederic Chain, Andrew P Hendry

Evol Appl· October 2024

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Splicing is dynamically regulated during limb development.
Sean Driscoll, Fjodor Merkuri, Frédéric J J Chain, Jennifer L Fish

Sci Rep· August 2024

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Epigenetic diversity of genes with copy number variations among natural populations of the three-spined stickleback.
Frédéric J J Chain, Britta S Meyer, Melanie J Heckwolf, Sören Franzenburg, Christophe Eizaguirre

Evol Appl· July 2024

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Origin matters: Using a local reference genome improves measures in population genomics.
Doko-Miles J Thorburn, Kostas Sagonas, Mahesh Binzer-Panchal, Frederic J J Chain, Philine G D Feulner

Mol Ecol Resour· October 2023

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Very Low Rates of Spontaneous Gene Deletions and Gene Duplications in Dictyostelium discoideum.
Shelbi E Gill, Frédéric J J Chain

J Mol Evol· February 2023

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Diversity in Expression Biases of Lineage-Specific Genes During Development and Anhydrobiosis Among Tardigrade Species.
Jean-Christophe Metivier, Frédéric J J Chain

Evol Bioinform Online· December 2022

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Effects of sewer biofilm on the degradation of drugs in sewage: A microcosm study.
Sheree A Pagsuyoin, Jiayue Luo, Frédéric J Chain

J Hazard Mater· February 2022

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Concatenation of paired-end reads improves taxonomic classification of amplicons for profiling microbial communities.
Daniel P Dacey, Frédéric J J Chain

BMC Bioinformatics· October 2021

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Lineage-Specific Genes and Family Expansions in Dictyostelid Genomes Display Expression Bias and Evolutionary Diversification during Development.
Saara K Luna, Frédéric J J Chain

Genes (Basel)· October 2021

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BLAST from the Past: Impacts of Evolving Approaches on Studies of Evolution by Gene Duplication.
Frédéric J J Chain, Raquel Assis

Genome Biol Evol· July 2021

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Refining analyses of existing data sets is valuable for macrogenetics: a response to Paz-Vinas, Jensen et al., (2021).
Katie L Millette, Vincent Fugère, Chloé Debyser, Ariel Greiner, Frédéric J J Chain

Ecol Lett· June 2021

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Copy number variations and young duplicate genes have high methylation levels in sticklebacks.
Katherine M Huang, Frédéric J J Chain

Evolution· March 2021

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Freshwater zooplankton metapopulations and metacommunities respond differently to environmental and spatial variation.
Gillian K Martin, Beatrix E Beisner, Frédéric J J Chain, Melania E Cristescu, Paul A Del Giorgio

Ecology· January 2021

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The Challenges of Microbial Control of Mosquito-Borne Diseases Due to the Gut Microbiome.
Daniel P Dacey, Frédéric J J Chain

Front Genet· October 2020

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Evolution of novel genes in three-spined stickleback populations.
Jonathan F Schmitz, Frédéric J J Chain, Erich Bornberg-Bauer

Heredity (Edinb)· August 2020

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Alternative splicing is highly variable among Daphnia pulex lineages in response to acute copper exposure.
Sneha Suresh, Teresa J Crease, Melania E Cristescu, Frédéric J J Chain

BMC Genomics· June 2020

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crispRdesignR: A Versatile Guide RNA Design Package in R for CRISPR/Cas9 Applications.
Dylan Beeber, Frédéric Jj Chain

J Genomics· May 2020

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No consistent effects of humans on animal genetic diversity worldwide.
Katie L Millette, Vincent Fugère, Chloé Debyser, Ariel Greiner, Frédéric J J Chain

Ecol Lett· January 2020

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Genome-Wide Genotype-Expression Relationships Reveal Both Copy Number and Single Nucleotide Differentiation Contribute to Differential Gene Expression between Stickleback Ecotypes.
Yun Huang, Philine G D Feulner, Christophe Eizaguirre, Tobias L Lenz, Erich Bornberg-Bauer, Frédéric J J Chain

Genome Biol Evol· August 2019

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