Publications by authors named "Freya Shearer"

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Modeling of H5N1 influenza virus kinetics during dairy cattle infection suggests the timing of infectiousness.
Oliver Eales, James M McCaw, Freya M Shearer

PLoS Biol· January 2026

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Web-based models to inform health policy: A scoping review.
Jade D Rae, Winnie Chen, Sophie Diarra, Nhung Nghiem, Rebecca H Chisholm, Freya Shearer

Health Res Policy Syst· August 2025

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A modular approach to forecasting COVID-19 hospital bed occupancy.
Ruarai J Tobin, Camelia R Walker, Robert Moss, James M McCaw, David J Price, Freya M Shearer

Commun Med (Lond)· August 2025

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Inferring temporal trends of multiple pathogens, variants, subtypes or serotypes from routine surveillance data.
Oliver Eales, Saras M Windecker, James M McCaw, Freya M Shearer

Am J Epidemiol· June 2025

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Predicting immune protection against outcomes of infectious disease from population-level effectiveness data with application to COVID-19.
Tianxiao Hao, Gerard E Ryan, Michael J Lydeamore, Deborah Cromer, James G Wood, Freya M Shearer

Vaccine· May 2025

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Quantifying the impact of contact tracing interview prioritisation strategies on disease transmission: A modelling study.
Logan Wu, Christopher M Baker, Nicholas Tierney, Kylie Carville, Jodie McVernon, Freya M Shearer

PLoS Comput Biol· April 2025

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The importance of playing the long game when it comes to pandemic surveillance.
Freya M Shearer, Marc Lipsitch

Proc Natl Acad Sci U S A· April 2025

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The overlapping global distribution of dengue, chikungunya, Zika and yellow fever.
Ahyoung Lim, Freya M Shearer, Kara Sewalk, David M Pigott, Joseph Clarke

Nat Commun· April 2025

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How immunity shapes the long-term dynamics of influenza H3N2.
Oliver Eales, Freya M Shearer, James M McCaw

PLoS Comput Biol· March 2025

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Biases in Routine Influenza Surveillance Indicators Used to Monitor Infection Incidence and Recommendations for Improvement.
Oliver Eales, James M McCaw, Freya M Shearer

Influenza Other Respir Viruses· December 2024

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Challenges in the case-based surveillance of infectious diseases.
Oliver Eales, James M McCaw, Freya M Shearer

R Soc Open Sci· August 2024

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A model-based assessment of social isolation practices for COVID-19 outbreak response in residential care facilities.
Cameron Zachreson, Ruarai Tobin, Camelia Walker, Eamon Conway, Freya M Shearer

BMC Infect Dis· August 2024

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Opportunities to strengthen respiratory virus surveillance systems in Australia: lessons learned from the COVID-19 response.
Freya M Shearer, Laura Edwards, Martyn Kirk, Oliver Eales, Nick Golding

Commun Dis Intell (2018)· July 2024

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Estimating measures to reduce the transmission of SARS-CoV-2 in Australia to guide a 'National Plan' to reopening.
Gerard E Ryan, Freya M Shearer, James M McCaw, Jodie McVernon, Nick Golding

Epidemics· June 2024

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Estimating the impact of test-trace-isolate-quarantine systems on SARS-CoV-2 transmission in Australia.
Freya M Shearer, James M McCaw, Gerard E Ryan, Tianxiao Hao, Nicholas J Tierney

Epidemics· June 2024

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Ethical frameworks should be applied to computational modelling of infectious disease interventions.
Cameron Zachreson, Julian Savulescu, Freya M Shearer, Michael J Plank, Simon Coghlan

PLoS Comput Biol· March 2024

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Key Challenges for Respiratory Virus Surveillance while Transitioning out of Acute Phase of COVID-19 Pandemic.
Oliver Eales, Michael J Plank, Benjamin J Cowling, Benjamin P Howden, Adam J Kucharski, Freya M Shearer

Emerg Infect Dis· February 2024

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A multi-criteria framework for disease surveillance site selection: case study for malaria in Indonesia.
Lucinda E Harrison, Jennifer A Flegg, Ruarai Tobin, Inke N D Lubis, Rintis Noviyanti, Freya M Shearer

R Soc Open Sci· January 2024

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Priority populations' experiences of isolation, quarantine and distancing for COVID-19: protocol for a longitudinal cohort study (Optimise Study).
Alisa Pedrana, Anna Bowring, Katherine Heath, Alexander J Thomas, Anna Wilkinson, Freya Shearer

BMJ Open· January 2024

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Updating estimates of Plasmodium knowlesi malaria risk in response to changing land use patterns across Southeast Asia.
Ruarai J Tobin, Lucinda E Harrison, Meg K Tully, Inke N D Lubis, Rintis Noviyanti, Freya M Shearer

PLoS Negl Trop Dis· January 2024

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Individual variation in vaccine immune response can produce bimodal distributions of protection.
Cameron Zachreson, Ruarai Tobin, Joshua Szanyi, Camelia Walker, Deborah Cromer, Freya M Shearer

Vaccine· October 2023

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Updating estimates of malaria risk in response to changing land use patterns across Southeast Asia.
Ruarai J Tobin, Lucinda E Harrison, Meg K Tully, Inke N D Lubis, Rintis Noviyanti, Freya M Shearer

medRxiv· August 2023

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COVID-19 vaccine coverage targets to inform reopening plans in a low incidence setting.
Eamon Conway, Camelia R Walker, Christopher Baker, Michael J Lydeamore, Gerard E Ryan, Freya M Shearer

Proc Biol Sci· August 2023

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Forecasting COVID-19 activity in Australia to support pandemic response: May to October 2020.
Robert Moss, David J Price, Nick Golding, Peter Dawson, Jodie McVernon, Freya M Shearer

Sci Rep· May 2023

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Inclusion of Cultural and Linguistic Diversity in COVID-19 Public Health Research: Research Design Adaptations to Seek Different Perspectives in Victoria, Australia.
Lisa Gibbs, Alexander J Thomas, Alison Coelho, Adil Al-Qassas, Karen Block, Freya Shearer

Int J Environ Res Public Health· January 2023

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