Publications by authors named "Gabriel Moreno-Hagelsieb"

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AUGcontext DB: a comprehensive catalog of the mRNA AUG initiator codon context across eukaryotes.
Vincent G Osnaya, Laura Gómez-Romero, Gabriel Moreno-Hagelsieb, Greco Hernández

RNA Biol· December 2025

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Comparative Genomics of Viral Genomes and Identification of Three Novel Viroporin-like Superfamilies.
Jianing Wang, Kevin J Hendargo, Katie Jing Kay Lam, Dai Ngoc Trang Dao, Gabriel Moreno-Hagelsieb

Microb Physiol· December 2025

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Ligand interaction landscape of transcription factors and essential enzymes in E. coli.
Hui Peng, Sergei Kotelnikov, Megan E Egbert, Shany Ofaim, Grant C Stevens, Gabriel Moreno-Hagelsieb

Cell· March 2025

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Analysis of eIF4E-family members in fungi contributes to their classification in eukaryotes.
Greco Hernández, Daniela Ross-Kaschitza, Gabriel Moreno-Hagelsieb, Alejandra García, Dora Emma Vélez

J Biol Chem· February 2025

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Thermal Plasticity and Evolutionary Constraints in : Implications for Climate Change Adaptation.
Enrique Hurtado-Bautista, Africa Islas-Robles, Gabriel Moreno-Hagelsieb, Gabriela Olmedo-Alvarez

Biology (Basel)· December 2024

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DeepReg: a deep learning hybrid model for predicting transcription factors in eukaryotic and prokaryotic genomes.
Leonardo Ledesma-Dominguez, Erik Carbajal-Degante, Gabriel Moreno-Hagelsieb, Ernesto Pérez-Rueda

Sci Rep· April 2024

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AnnoView enables large-scale analysis, comparison, and visualization of microbial gene neighborhoods.
Xin Wei, Huagang Tan, Briallen Lobb, William Zhen, Zijing Wu, Gabriel Moreno-Hagelsieb

Brief Bioinform· March 2024

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Functional analysis of the AUG initiator codon context reveals novel conserved sequences that disfavor mRNA translation in eukaryotes.
Greco Hernández, Alejandra García, Shira Weingarten-Gabbay, Rishi Kumar Mishra, Tanweer Hussain, Gabriel Moreno-Hagelsieb

Nucleic Acids Res· February 2024

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Sequence Similarity among Structural Repeats in the Piezo Family of Mechanosensitive Ion Channels.
Kevin J Hendargo, Ashay O Patel, Onyeka S Chukwudozie, Gabriel Moreno-Hagelsieb, J Andres Christen

Microb Physiol· December 2023

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Fast genome-based delimitation of Enterobacterales species.
Julie E Hernández-Salmerón, Tanya Irani, Gabriel Moreno-Hagelsieb

PLoS One· September 2023

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Comparative analysis of adenylate isopentenyl transferase genes in plant growth-promoting bacteria and plant pathogenic bacteria.
Xin Wei, Gabriel Moreno-Hagelsieb, Bernard R Glick, Andrew C Doxey

Heliyon· March 2023

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FastANI, Mash and Dashing equally differentiate between species.
Julie E Hernández-Salmerón, Gabriel Moreno-Hagelsieb

PeerJ· January 2023

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Non-synonymous to synonymous substitutions suggest that orthologs tend to keep their functions, while paralogs are a source of functional novelty.
Juan M Escorcia-Rodríguez, Mario Esposito, Julio A Freyre-González, Gabriel Moreno-Hagelsieb

PeerJ· January 2023

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Comparative genomic and functional analysis of sp. UMCV2 reveals the presence of -related genes inducible by the biocompound -dimethylhexadecilamine.
Martha Patricia Chávez-Moctezuma, Ramiro Martínez-Cámara, Julie Hernández-Salmerón, Gabriel Moreno-Hagelsieb, Gustavo Santoyo

Front Microbiol· October 2022

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RegulonDB 11.0: Comprehensive high-throughput datasets on transcriptional regulation in K-12.
Víctor H Tierrafría, Claire Rioualen, Heladia Salgado, Paloma Lara, Socorro Gama-Castro, Gabriel Moreno-Hagelsieb

Microb Genom· May 2022

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The Functional Differences between the GroEL Chaperonin of and the HtpB Chaperonin of Can Be Mapped to Specific Amino Acid Residues.
Karla N Valenzuela-Valderas, Gabriel Moreno-Hagelsieb, John R Rohde, Rafael A Garduño

Biomolecules· December 2021

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PathFams: statistical detection of pathogen-associated protein domains.
Briallen Lobb, Benjamin Jean-Marie Tremblay, Gabriel Moreno-Hagelsieb, Andrew C Doxey

BMC Genomics· September 2021

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The Transporter Classification Database (TCDB): 2021 update.
Milton H Saier, Vamsee S Reddy, Gabriel Moreno-Hagelsieb, Kevin J Hendargo, Yichi Zhang

Nucleic Acids Res· January 2021

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Progress in quickly finding orthologs as reciprocal best hits: comparing blast, last, diamond and MMseqs2.
Julie E Hernández-Salmerón, Gabriel Moreno-Hagelsieb

BMC Genomics· October 2020

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Expansion of the Transporter-Opsin-G protein-coupled receptor superfamily with five new protein families.
Arturo Medrano-Soto, Faezeh Ghazi, Kevin J Hendargo, Gabriel Moreno-Hagelsieb, Scott Myers

PLoS One· July 2020

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The volatile organic compound dimethylhexadecylamine affects bacterial growth and swarming motility of bacteria.
Ramiro Martínez-Cámara, Vicente Montejano-Ramírez, Gabriel Moreno-Hagelsieb, Gustavo Santoyo, Eduardo Valencia-Cantero

Folia Microbiol (Praha)· June 2020

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An assessment of genome annotation coverage across the bacterial tree of life.
Briallen Lobb, Benjamin Jean-Marie Tremblay, Gabriel Moreno-Hagelsieb, Andrew C Doxey

Microb Genom· March 2020

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The predominance of nucleotidyl activation in bacterial phosphonate biosynthesis.
Kyle Rice, Kissa Batul, Jacqueline Whiteside, Jayne Kelso, Monica Papinski, Gabriel Moreno-Hagelsieb

Nat Commun· August 2019

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Aldehyde dehydrogenase diversity in bacteria of the Pseudomonas genus.
Héctor Riveros-Rosas, Adriana Julián-Sánchez, Gabriel Moreno-Hagelsieb, Rosario A Muñoz-Clares

Chem Biol Interact· May 2019

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Environmentally-driven gene content convergence and the Bacillus phylogeny.
Ismael L Hernández-González, Gabriel Moreno-Hagelsieb, Gabriela Olmedo-Álvarez

BMC Evol Biol· October 2018

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