Publications by authors named "Garrett Jenkinson"

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UNISOM: Unified Somatic Calling and Machine Learning-based Classification Enhance the Discovery of CHIP.
Shulan Tian, Garrett Jenkinson, Alejandro Ferrer, Huihuang Yan, Joel A Morales-Rosado

Genomics Proteomics Bioinformatics· May 2025

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Corrigendum to "Identification of gene regulatory networks associated with breast cancer patient survival using an interpretable deep neural network model" [Expert Syst. Appl. 262 (2025) 125632].
Xue Wang, Vivekananda Sarangi, Daniel P Wickland, Shaoyu Li, Duan Chen, Garrett Jenkinson

Expert Syst Appl· April 2025

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Identification of Gene Regulatory Networks Associated with Breast Cancer Patient Survival Using an Interpretable Deep Neural Network Model.
Xue Wang, Vivekananda Sarangi, Daniel P Wickland, Shaoyu Li, Duan Chen, Garrett Jenkinson

Expert Syst Appl· March 2025

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A clinical knowledge graph-based framework to prioritize candidate genes for facilitating diagnosis of Mendelian diseases and rare genetic conditions.
Rohan Gnanaolivu, Gavin Oliver, Garrett Jenkinson, Emily Blake, Wenan Chen

BMC Bioinformatics· March 2025

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Identification of skewed X chromosome inactivation using exome and transcriptome sequencing in patients with suspected rare genetic disease.
Numrah Fadra, Laura E Schultz-Rogers, Pritha Chanana, Margot A Cousin, Erica L Macke, Garrett Jenkinson

BMC Genomics· April 2024

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A supervised learning method for classifying methylation disorders.
Jesse R Walsh, Guangchao Sun, Jagadheshwar Balan, Jayson Hardcastle, Jason Vollenweider, Garrett Jenkinson

BMC Bioinformatics· February 2024

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MICon Contamination Detection Workflow for Next-Generation Sequencing Laboratories Using Microhaplotype Loci and Supervised Learning.
Jagadheshwar Balan, Tejaswi Koganti, Shubham Basu, Michelle A Dina, Cody J Artymiuk, Garrett Jenkinson

J Mol Diagn· August 2023

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εγ-Thalassemia, a New Hemoglobinopathy Category.
Jennifer L Oliveira, Christineil H Thompson, Siva Arumugam Saravanaperumal, Tejaswi Koganti, Garrett Jenkinson

Clin Chem· July 2023

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Authorized SARS-CoV-2 molecular methods show wide variability in the limit of detection.
Joseph H Blommel, Garrett Jenkinson, Matthew J Binnicker, Brad S Karon, Luigi Boccuto

Diagn Microbiol Infect Dis· March 2023

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Multiomics single timepoint measurements to predict severe COVID-19 - Authors' reply.
Kishore Garapati, Seul Kee Byeon, Jesse R Walsh, Garrett Jenkinson, Roberto Cattaneo

Lancet Digit Health· February 2023

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Real-world performance of SARS-Cov-2 serology tests in the United States, 2020.
Carla V Rodriguez-Watson, Anthony M Louder, Carly Kabelac, Christopher M Frederick, Natalie E Sheils, Garrett Jenkinson

PLoS One· February 2023

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Impact of integrated translational research on clinical exome sequencing.
Eric W Klee, Margot A Cousin, Filippo Pinto E Vairo, Joel A Morales-Rosado, Erica L Macke, W Garrett Jenkinson

Genet Med· February 2023

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Development of a multiomics model for identification of predictive biomarkers for COVID-19 severity: a retrospective cohort study.
Seul Kee Byeon, Anil K Madugundu, Kishore Garapati, Madan Gopal Ramarajan, Mayank Saraswat, Garrett Jenkinson

Lancet Digit Health· September 2022

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SeekFusion - A Clinically Validated Fusion Transcript Detection Pipeline for PCR-Based Next-Generation Sequencing of RNA.
Jagadheshwar Balan, Garrett Jenkinson, Asha Nair, Neiladri Saha, Tejaswi Koganti

Front Genet· October 2021

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COVID-19 Mortality Prediction From Deep Learning in a Large Multistate Electronic Health Record and Laboratory Information System Data Set: Algorithm Development and Validation.
Saranya Sankaranarayanan, Jagadheshwar Balan, Jesse R Walsh, Yanhong Wu, Sara Minnich, Garrett Jenkinson

J Med Internet Res· September 2021

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Comparison of In Situ Hybridization, Immunohistochemistry, and Reverse Transcription-Droplet Digital Polymerase Chain Reaction for Severe Acute Respiratory Syndrome Coronavirus 2 (SARS-CoV-2) Testing in Tissue.
Anja C Roden, Julie A Vrana, Justin W Koepplin, Angela E Hudson, Andrew P Norgan, Garrett Jenkinson

Arch Pathol Lab Med· July 2021

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Converging genetic and epigenetic drivers of paediatric acute lymphoblastic leukaemia identified by an information-theoretic analysis.
Michael A Koldobskiy, Garrett Jenkinson, Jordi Abante, Varenka A Rodriguez DiBlasi, Weiqiang Zhou

Nat Biomed Eng· April 2021

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Impact of integrated translational research on clinical exome sequencing.
Eric W Klee, Margot A Cousin, Filippo Pinto E Vairo, Joel A Morales-Rosado, Erica L Macke, W Garrett Jenkinson

Genet Med· March 2021

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LeafCutterMD: an algorithm for outlier splicing detection in rare diseases.
Garrett Jenkinson, Yang I Li, Shubham Basu, Margot A Cousin, Gavin R Oliver

Bioinformatics· November 2020

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A Dysregulated DNA Methylation Landscape Linked to Gene Expression in MLL-Rearranged AML.
Michael A Koldobskiy, Jordi Abante, Garrett Jenkinson, Elisabet Pujadas, Ashley Tetens

Epigenetics· August 2020

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A tailored approach to fusion transcript identification increases diagnosis of rare inherited disease.
Gavin R Oliver, Xiaojia Tang, Laura E Schultz-Rogers, Noemi Vidal-Folch, W Garrett Jenkinson

PLoS One· March 2020

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Computational Detection of Known Pathogenic Gene Fusions in a Normal Tissue Database and Implications for Genetic Disease Research.
Gavin Robert Oliver, Garrett Jenkinson, Eric W Klee

Front Genet· February 2020

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An intragenic duplication of leading to abnormal transcripts and causing trichorhinophalangeal syndrome type I.
Cinthya J Zepeda-Mendoza, Margot A Cousin, Shubham Basu, Garrett Jenkinson, Gavin Oliver

Cold Spring Harb Mol Case Stud· December 2019

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Ranking genomic features using an information-theoretic measure of epigenetic discordance.
Garrett Jenkinson, Jordi Abante, Michael A Koldobskiy, Andrew P Feinberg, John Goutsias

BMC Bioinformatics· April 2019

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