Publications by authors named "Gavin Bascom"

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Scaling molecular dynamics beyond 100,000 processor cores for large-scale biophysical simulations.
Jaewoon Jung, Wataru Nishima, Marcus Daniels, Gavin Bascom, Chigusa Kobayashi

J Comput Chem· August 2019

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Mesoscale modeling reveals formation of an epigenetically driven HOXC gene hub.
Gavin D Bascom, Christopher G Myers, Tamar Schlick

Proc Natl Acad Sci U S A· March 2019

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Chromatin Fiber Folding Directed by Cooperative Histone Tail Acetylation and Linker Histone Binding.
Gavin D Bascom, Tamar Schlick

Biophys J· May 2018

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Cohesin Loss Eliminates All Loop Domains.
Suhas S P Rao, Su-Chen Huang, Brian Glenn St Hilaire, Jesse M Engreitz, Elizabeth M Perez, Gavin D Bascom

Cell· October 2017

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Kilobase Pair Chromatin Fiber Contacts Promoted by Living-System-Like DNA Linker Length Distributions and Nucleosome Depletion.
Gavin D Bascom, Taejin Kim, Tamar Schlick

J Phys Chem B· April 2017

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Linking Chromatin Fibers to Gene Folding by Hierarchical Looping.
Gavin Bascom, Tamar Schlick

Biophys J· February 2017

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Mesoscale Modeling Reveals Hierarchical Looping of Chromatin Fibers Near Gene Regulatory Elements.
Gavin D Bascom, Karissa Y Sanbonmatsu, Tamar Schlick

J Phys Chem B· August 2016

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Hierarchical looping of zigzag nucleosome chains in metaphase chromosomes.
Sergei A Grigoryev, Gavin Bascom, Jenna M Buckwalter, Michael B Schubert, Christopher L Woodcock

Proc Natl Acad Sci U S A· February 2016

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Single-Walled Carbon Nanotubes Modulate the B- to A-DNA Transition.
Gavin Bascom, Ioan Andricioaei

J Phys Chem C Nanomater Interfaces· December 2014

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Design, synthesis, and activity of a series of arylpyrid-3-ylmethanones as type I positive allosteric modulators of α7 nicotinic acetylcholine receptors.
Derk J Hogenkamp, Thomas A Ford-Hutchinson, Wen-Yen Li, Edward R Whittemore, Ryan F Yoshimura, Gavin D Bascom

J Med Chem· November 2013

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A general method for constructing atomic-resolution RNA ensembles using NMR residual dipolar couplings: the basis for interhelical motions revealed.
Loïc Salmon, Gavin Bascom, Ioan Andricioaei, Hashim M Al-Hashimi

J Am Chem Soc· April 2013

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Probing sequence-specific DNA flexibility in a-tracts and pyrimidine-purine steps by nuclear magnetic resonance (13)C relaxation and molecular dynamics simulations.
Evgenia N Nikolova, Gavin D Bascom, Ioan Andricioaei, Hashim M Al-Hashimi

Biochemistry· October 2012

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