Publications by authors named "Gene Tan"

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Machine Learning Analysis of Post-Acute COVID Symptoms Identifies Distinct Clusters and Severity Groups.
Beverly Peng, Yun Zhang, Thomas Dalhuisen, Aidan Rogers, Jesus Estevez, Gene S Tan

medRxiv· November 2025

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Highly conserved Betacoronavirus sequences are broadly recognized by human T cells.
Tertuliano Alves Pereira Neto, Christian Zmasek, Liliana Avalos, John Sidney, Raphael Trevizani, Gene S Tan

Cell· October 2025

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Impact of naturally occurring hemagglutinin substitutions on antigenicity and fitness of influenza A(H5N1) virus.
Li Wang, Masato Hatta, Chenchen Feng, Paul Carney, Melvyn R Almanzar-Jordan, Gene Tan

Npj Viruses· October 2025

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A versatile H5N1-VSV platform for safe influenza virus research applications.
Boopathi Sownthirarajan, Maya Mason, Gayathri Loganathan, Senthamizharasi Manivasagam, Rohit K Jangra, Gene S Tan

J Virol· September 2025

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Targeting the SARS-CoV-2 reservoir in long COVID.
Amy D Proal, Soo Aleman, Morgane Bomsel, Petter Brodin, Marcus Buggert, Gene S Tan

Lancet Infect Dis· May 2025

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Sialylated IgG induces the transcription factor REST in alveolar macrophages to protect against lung inflammation and severe influenza disease.
Saborni Chakraborty, Bowie Yik-Ling Cheng, Desmond L Edwards, Joseph C Gonzalez, David Kung-Chun Chiu, Gene S Tan

Immunity· January 2025

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Major alteration of lung microbiome and the host responses in critically ill COVID-19 patients with high viral load.
Ingrid G Bustos, Rosana Wiscovitch-Russo, Harinder Singh, Benjamín L Sievers, Michele Matsuoka, Gene S Tan

Sci Rep· November 2024

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Unveiling the microbial realm with VEBA 2.0: a modular bioinformatics suite for end-to-end genome-resolved prokaryotic, (micro)eukaryotic and viral multi-omics from either short- or long-read sequencing.
Josh L Espinoza, Allan Phillips, Melanie B Prentice, Gene S Tan, Pauline L Kamath

Nucleic Acids Res· August 2024

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Structural basis of Zika virus NS1 multimerization and human antibody recognition.
Bing Liang Alvin Chew, An Qi Ngoh, Wint Wint Phoo, Mei Jie Grace Weng, Ho Jun Sheng, Eddie Yong Jun Tan, Gene S Tan

Npj Viruses· April 2024

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Major alteration of Lung Microbiome and the Host Reaction in critically ill COVID-19 Patients with high viral load.
Ingrid G Bustos, Rosana Wiscovitch-Russo, Harinder Singh, Benjamín L Sievers, Michele Matsuoka, Gene S Tan

Res Sq· March 2024

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Unveiling the Microbial Realm with VEBA 2.0: A modular bioinformatics suite for end-to-end genome-resolved prokaryotic, (micro)eukaryotic, and viral multi-omics from either short- or long-read sequencing.
Josh L Espinoza, Allan Phillips, Melanie B Prentice, Gene S Tan, Pauline L Kamath

bioRxiv· March 2024

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SARS-CoV-2 reservoir in post-acute sequelae of COVID-19 (PASC).
Amy D Proal, Michael B VanElzakker, Soo Aleman, Katie Bach, Brittany P Boribong, Gene S Tan, Rudolph E Tanzi

Nat Immunol· October 2023

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Author Correction: SARS-CoV-2 reservoir in post-acute sequelae of COVID-19 (PASC).
Amy D Proal, Michael B VanElzakker, Soo Aleman, Katie Bach, Brittany P Boribong, Gene S Tan, Rudolph E Tanzi

Nat Immunol· October 2023

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Whole-genome characterization of common rotavirus strains circulating in Vellore, India from 2002 to 2017: emergence of non-classical genomic constellations.
Shainey Alokit Khakha, Tintu Varghese, Sidhartha Giri, Alan Durbin, Gene S Tan

Gut Pathog· September 2023

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Persistent immune and clotting dysfunction detected in saliva and blood plasma after COVID-19.
Hyesun Jang, Saibyasachi Choudhury, Yanbao Yu, Benjamin L Sievers, Terri Gelbart, Gene S Tan

Heliyon· July 2023

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Influenza A viruses in gulls in landfills and freshwater habitats in Minnesota, United States.
Elizabeth A Rasmussen, Agata Czaja, Francesca J Cuthbert, Gene S Tan, Philippe Lemey

Front Genet· May 2023

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Epistasis reduces fitness costs of influenza A virus escape from stem-binding antibodies.
Chung-Young Lee, Vedhika Raghunathan, C Joaquin Caceres, Ginger Geiger, Brittany Seibert, Gene S Tan

Proc Natl Acad Sci U S A· April 2023

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Major adverse cardiovascular events are associated with necroptosis during severe COVID-19.
Rosana Wiscovitch-Russo, Elsa D Ibáñez-Prada, Cristian C Serrano-Mayorga, Benjamin L Sievers, Maeve A Engelbride, Gene S Tan

Crit Care· April 2023

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Introducing the Bacterial and Viral Bioinformatics Resource Center (BV-BRC): a resource combining PATRIC, IRD and ViPR.
Robert D Olson, Rida Assaf, Thomas Brettin, Neal Conrad, Clark Cucinell, Gene Tan

Nucleic Acids Res· January 2023

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Necroptosis Drives Major Adverse Cardiovascular Events During Severe COVID-19.
Rosana Wiscovitch-Russo, Elsa D Ibáñez-Prada, Cristian C Serrano-Mayorga, Benjamin L Sievers, Maeve A Engelbride, Gene S Tan

Res Sq· January 2023

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A high-throughput SARS-CoV-2 pseudovirus multiplex neutralization assay.
Benjamin Louis Sievers, Terri Gelbart, Gene S Tan

STAR Protoc· December 2022

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Early immune markers of clinical, virological, and immunological outcomes in patients with COVID-19: a multi-omics study.
Zicheng Hu, Kattria van der Ploeg, Saborni Chakraborty, Prabhu S Arunachalam, Diego A M Mori, Chaitan Khosla, Gene S Tan

Elife· October 2022

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TNF-α CD4 T cells dominate the SARS-CoV-2 specific T cell response in COVID-19 outpatients and are associated with durable antibodies.
Kattria van der Ploeg, Adam S Kirosingh, Diego A M Mori, Saborni Chakraborty, Zicheng Hu, Daniel R Ruiz-Betancourt, Gene S Tan

Cell Rep Med· June 2022

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Early non-neutralizing, afucosylated antibody responses are associated with COVID-19 severity.
Saborni Chakraborty, Joseph C Gonzalez, Benjamin L Sievers, Vamsee Mallajosyula, Srijoni Chakraborty, Chaitan Khosla, Gene S Tan

Sci Transl Med· March 2022

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Early immune responses have long-term associations with clinical, virologic, and immunologic outcomes in patients with COVID-19.
Zicheng Hu, Kattria van der Ploeg, Saborni Chakraborty, Prabhu Arunachalam, Diego Mori, Gene Tan

Res Sq· February 2022

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