Publications by authors named "Geoff Baldwin"

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Coexistence and collaboration: engineering encapsulation for whole-cell biosensors.
Zalike Keskin Erdogan, Kushaal Desai, Geoff S Baldwin, Karen M Polizzi

Trends Biotechnol· November 2025

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Boolean matrix logic programming for active learning of gene functions in genome-scale metabolic network models.
Lun Ai, Stephen H Muggleton, Shi-Shun Liang, Geoff S Baldwin

Mach Learn· October 2025

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Fine-Tuning Genetic Circuits via Host Context and RBS Modulation.
Dennis Tin Chat Chan, Lena Winter, Johan Bjerg, Stina Krsmanovic, Geoff S Baldwin

ACS Synth Biol· January 2025

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Standardization of Fluorescent Reporter Assays in Synthetic Biology across the Visible Light Spectrum.
Lien De Wannemaeker, Friederike Mey, Indra Bervoets, Michiel Ver Cruysse, Geoff S Baldwin

ACS Synth Biol· December 2023

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Revealing the Host-Dependent Nature of an Engineered Genetic Inverter in Concordance with Physiology.
Dennis Tin Chat Chan, Geoff S Baldwin, Hans C Bernstein

Biodes Res· August 2023

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basicsynbio and the BASIC SEVA collection: software and vectors for an established DNA assembly method.
Matthew C Haines, Benedict Carling, James Marshall, Vasily A Shenshin, Geoff S Baldwin

Synth Biol (Oxf)· October 2022

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Multicolor plate reader fluorescence calibration.
Jacob Beal, Cheryl A Telmer, Alejandro Vignoni, Yadira Boada, Geoff S Baldwin

Synth Biol (Oxf)· August 2022

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The automated Galaxy-SynBioCAD pipeline for synthetic biology design and engineering.
Joan Hérisson, Thomas Duigou, Melchior du Lac, Kenza Bazi-Kabbaj, Mahnaz Sabeti Azad, Geoff S Baldwin

Nat Commun· August 2022

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Synthetic biology and bioelectrochemical tools for electrogenetic system engineering.
Joshua M Lawrence, Yutong Yin, Paolo Bombelli, Alberto Scarampi, Marko Storch, Geoff S Baldwin

Sci Adv· May 2022

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A modular RNA interference system for multiplexed gene regulation.
Ari Dwijayanti, Marko Storch, Guy-Bart Stan, Geoff S Baldwin

Nucleic Acids Res· February 2022

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Comparative analysis of three studies measuring fluorescence from engineered bacterial genetic constructs.
Jacob Beal, Geoff S Baldwin, Natalie G Farny, Markus Gershater, Traci Haddock-Angelli

PLoS One· October 2021

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BASIC: A Simple and Accurate Modular DNA Assembly Method.
Marko Storch, Ari Dwijayanti, Haris Mallick, Matthew C Haines, Geoff S Baldwin

Methods Mol Biol· March 2021

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Author Correction: Robust estimation of bacterial cell count from optical density.
Jacob Beal, Natalie G Farny, Traci Haddock-Angelli, Vinoo Selvarajah, Geoff S Baldwin

Commun Biol· October 2020

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Robust estimation of bacterial cell count from optical density.
Jacob Beal, Natalie G Farny, Traci Haddock-Angelli, Vinoo Selvarajah, Geoff S Baldwin

Commun Biol· September 2020

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DNA-BOT: a low-cost, automated DNA assembly platform for synthetic biology.
Marko Storch, Matthew C Haines, Geoff S Baldwin

Synth Biol (Oxf)· July 2020

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The long journey towards standards for engineering biosystems: Are the Molecular Biology and the Biotech communities ready to standardise?
Jacob Beal, Angel Goñi-Moreno, Chris Myers, Ariel Hecht, María Del Carmen de Vicente, Geoff Baldwin

EMBO Rep· May 2020

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The effect of modulating the quantity of enzymes in a model ethanol pathway on metabolic flux in sp. PCC 6803.
Paulina Bartasun, Nicole Prandi, Marko Storch, Yarin Aknin, Mark Bennett, Geoff Baldwin

PeerJ· August 2019

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Riboswitch identification using Ligase-Assisted Selection for the Enrichment of Responsive Ribozymes (LigASERR).
Matthew C Haines, Marko Storch, Diego A Oyarzún, Guy-Bart Stan, Geoff S Baldwin

Synth Biol (Oxf)· July 2019

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Quantification of bacterial fluorescence using independent calibrants.
Jacob Beal, Traci Haddock-Angelli, Geoff Baldwin, Markus Gershater, Ari Dwijayanti

PLoS One· April 2019

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Structural basis for recognition and repair of the 3'-phosphate by NExo, a base excision DNA repair nuclease from Neisseria meningitidis.
Jan Silhan, Qiyuan Zhao, Evzen Boura, Hellen Thomson, Andreas Förster, Geoff S Baldwin

Nucleic Acids Res· December 2018

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BASIC: A Simple and Accurate Modular DNA Assembly Method.
Marko Storch, Arturo Casini, Ben Mackrow, Tom Ellis, Geoff S Baldwin

Methods Mol Biol· January 2018

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BASIC: A New Biopart Assembly Standard for Idempotent Cloning Provides Accurate, Single-Tier DNA Assembly for Synthetic Biology.
Marko Storch, Arturo Casini, Ben Mackrow, Toni Fleming, Harry Trewhitt, Geoff S Baldwin

ACS Synth Biol· July 2015

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Analysis of DNA binding and nucleotide flipping kinetics using two-color two-photon fluorescence lifetime imaging microscopy.
Tom Robinson, Prashant Valluri, Gordon Kennedy, Alessandro Sardini, Christopher Dunsby, Geoff S Baldwin

Anal Chem· November 2014

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R2oDNA designer: computational design of biologically neutral synthetic DNA sequences.
Arturo Casini, Georgia Christodoulou, Paul S Freemont, Geoff S Baldwin, Tom Ellis

ACS Synth Biol· August 2014

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One-pot DNA construction for synthetic biology: the Modular Overlap-Directed Assembly with Linkers (MODAL) strategy.
Arturo Casini, James T MacDonald, Joachim De Jonghe, Georgia Christodoulou, Paul S Freemont, Geoff S Baldwin

Nucleic Acids Res· January 2014

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