Publications by authors named "Gerrit Botha"

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An assessment of the genomic structural variation landscape in Sub-Saharan African populations.
Emma Wiener, Laura Cottino, Gerrit Botha, Oscar Nyangiri, Harry Noyes

Res Sq· July 2024

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Analysis of Structural Variants Previously Associated With ALS in Europeans Highlights Genomic Architectural Differences in Africans.
Nomakhosazana R Monnakgotla, Amokelani C Mahungu, Jeannine M Heckmann, Gerrit Botha, Nicola J Mulder

Neurol Genet· August 2023

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Performance and accuracy evaluation of reference panels for genotype imputation in sub-Saharan African populations.
Dhriti Sengupta, Gerrit Botha, Ayton Meintjes, Mamana Mbiyavanga,

Cell Genom· June 2023

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H3AGWAS: a portable workflow for genome wide association studies.
Jean-Tristan Brandenburg, Lindsay Clark, Gerrit Botha, Sumir Panji, Shakuntala Baichoo

BMC Bioinformatics· November 2022

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Revealing the Mutational Spectrum in Southern Africans With Amyotrophic Lateral Sclerosis.
Melissa Nel, Amokelani C Mahungu, Nomakhosazana Monnakgotla, Gerrit R Botha, Nicola J Mulder

Neurol Genet· February 2022

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G6PD distribution in sub-Saharan Africa and potential risks of using chloroquine/hydroxychloroquine based treatments for COVID-19.
Jorge E B da Rocha, Houcemeddine Othman, Caroline T Tiemessen, Gerrit Botha, Michèle Ramsay

Pharmacogenomics J· December 2021

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Repeats expansions in , and are not associated with ALS in Africans.
Melissa Nel, Thandeka Mavundla, Kayleigh Gultig, Gerrit Botha, Nicola Mulder

IBRO Neurosci Rep· June 2021

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Author Correction: High-depth African genomes inform human migration and health.
Ananyo Choudhury, Shaun Aron, Laura R Botigué, Dhriti Sengupta, Gerrit Botha

Nature· April 2021

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The Extent and Impact of Variation in ADME Genes in Sub-Saharan African Populations.
Jorge E B da Rocha, Houcemeddine Othman, Gerrit Botha, Laura Cottino, David Twesigomwe

Front Pharmacol· April 2021

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Unmapped exome reads implicate a role for Anelloviridae in childhood HIV-1 long-term non-progression.
Savannah Mwesigwa, Lesedi Williams, Gaone Retshabile, Eric Katagirya, Gerald Mboowa, Gerrit Botha

NPJ Genom Med· March 2021

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Using a multiple-delivery-mode training approach to develop local capacity and infrastructure for advanced bioinformatics in Africa.
Verena Ras, Gerrit Botha, Shaun Aron, Katie Lennard, Imane Allali

PLoS Comput Biol· February 2021

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RDP5: a computer program for analyzing recombination in, and removing signals of recombination from, nucleotide sequence datasets.
Darren P Martin, Arvind Varsani, Philippe Roumagnac, Gerrit Botha, Suresh Maslamoney

Virus Evol· January 2021

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High-depth African genomes inform human migration and health.
Ananyo Choudhury, Shaun Aron, Laura R Botigué, Dhriti Sengupta, Gerrit Botha

Nature· October 2020

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variant distribution in sub-Saharan Africa and potential risks of using chloroquine/hydroxychloroquine based treatments for COVID-19.
Jorge da Rocha, Houcemeddine Othman, Caroline T Tiemessen, Gerrit Botha, Michèle Ramsay

medRxiv· June 2020

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Association of maternal prenatal psychological stressors and distress with maternal and early infant faecal bacterial profile.
Petrus J W Naudé, Shantelle Claassen-Weitz, Sugnet Gardner-Lubbe, Gerrit Botha, Mamadou Kaba

Acta Neuropsychiatr· February 2020

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Organizing and running bioinformatics hackathons within Africa: The H3ABioNet cloud computing experience.
Azza E Ahmed, Phelelani T Mpangase, Sumir Panji, Shakuntala Baichoo, Yassine Souilmi, Gerrit Botha

AAS Open Res· August 2019

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Developing reproducible bioinformatics analysis workflows for heterogeneous computing environments to support African genomics.
Shakuntala Baichoo, Yassine Souilmi, Sumir Panji, Gerrit Botha, Ayton Meintjes

BMC Bioinformatics· November 2018

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HIV-exposure, early life feeding practices and delivery mode impacts on faecal bacterial profiles in a South African birth cohort.
Shantelle Claassen-Weitz, Sugnet Gardner-Lubbe, Paul Nicol, Gerrit Botha, Stephanie Mounaud

Sci Rep· March 2018

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Microbial Composition Predicts Genital Tract Inflammation and Persistent Bacterial Vaginosis in South African Adolescent Females.
Katie Lennard, Smritee Dabee, Shaun L Barnabas, Enock Havyarimana, Anna Blakney, Gerrit Botha

Infect Immun· January 2018

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Whole-genome sequencing for an enhanced understanding of genetic variation among South Africans.
Ananyo Choudhury, Michèle Ramsay, Scott Hazelhurst, Shaun Aron, Soraya Bardien, Gerrit Botha

Nat Commun· December 2017

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Assessing computational genomics skills: Our experience in the H3ABioNet African bioinformatics network.
C Victor Jongeneel, Ovokeraye Achinike-Oduaran, Ezekiel Adebiyi, Marion Adebiyi, Seun Adeyemi, Gerrit Botha

PLoS Comput Biol· June 2017

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Afri-Can Forum 2 : Johannesburg, South Africa. 16-18 February 2015.
Hillary Mukudu, Neil Martinson, Benn Sartorius, Jenny Coetzee, Janan Dietrich, Gerrit Botha

BMC Infect Dis· July 2016

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