Publications by authors named "Ghassan Hamarneh"

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BiasPruner: Mitigating bias transfer in continual learning for fair medical image analysis.
Nourhan Bayasi, Jamil Fayyad, Alceu Bissoto, Ghassan Hamarneh, Rafeef Garbi

Med Image Anal· December 2025

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Physician-in-the-Loop Active Learning in Radiology Artificial Intelligence Workflows: Opportunities, Challenges, and Future Directions.
Monica Luo, Fereshteh Yousefirizi, Pouria Rouzrokh, Weina Jin, Ian Alberts, Ghassan Hamarneh

AJR Am J Roentgenol· November 2025

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nERdy: network analysis of endoplasmic reticulum dynamics.
Ashwin Samudre, Guang Gao, Ben Cardoen, Bharat Joshi, Ivan Robert Nabi, Ghassan Hamarneh

Commun Biol· November 2025

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HDCluster: High-Degree Graph Clustering for Robust Analysis of Single Molecule Localization Microscopy.
Ismail M Khater, Ivan Robert Nabi, Ghassan Hamarneh

bioRxiv· October 2025

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Enhanced direct joint attenuation and scatter correction of whole-body PET images via context-aware deep networks.
Saeed Izadi, Isaac Shiri, Carlos F Uribe, Parham Geramifar, Habib Zaidi, Ghassan Hamarneh

Z Med Phys· August 2025

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Closing the multichannel gap through computational reconstruction of interaction in super-resolution microscopy.
Ben Cardoen, Hanene Ben Yedder, Ivan Robert Nabi, Ghassan Hamarneh

Patterns (N Y)· May 2025

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Comparative Analysis of SPLICS and MCS-DETECT for Detecting Mitochondria-ER Contact Sites (MERCs).
Jieyi Zheng, Ben Cardoen, Milene Ortiz-Silva, Ghassan Hamarneh, Ivan R Nabi

Contact (Thousand Oaks)· March 2025

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SuperResNET: Model-Free Single-Molecule Network Analysis Software Achieves Molecular Resolution of Nup96.
Yahongyang Lydia Li, Ismail M Khater, Christian Hallgrimson, Ben Cardoen, Timothy H Wong, Ghassan Hamarneh

Adv Intell Syst· March 2025

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SuperResNET - single-molecule network analysis detects changes to clathrin structure induced by small-molecule inhibitors.
Timothy H Wong, Ismail M Khater, Christian Hallgrimson, Y Lydia Li, Ghassan Hamarneh

J Cell Sci· February 2025

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Investigating the Quality of DermaMNIST and Fitzpatrick17k Dermatological Image Datasets.
Kumar Abhishek, Aditi Jain, Ghassan Hamarneh

Sci Data· February 2025

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GC: Generalizable Continual Classification of Medical Images.
Nourhan Bayasi, Ghassan Hamarneh, Rafeef Garbi

IEEE Trans Med Imaging· November 2024

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From Human-in-the-Loop to Human-in-Power.
Elise Li Zheng, Weina Jin, Ghassan Hamarneh, Sandra Soo-Jin Lee

Am J Bioeth· September 2024

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AI analysis of super-resolution microscopy: Biological discovery in the absence of ground truth.
Ivan R Nabi, Ben Cardoen, Ismail M Khater, Guang Gao, Timothy H Wong, Ghassan Hamarneh

J Cell Biol· August 2024

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Deep orthogonal multi-wavelength fusion for tomogram-free diagnosis in diffuse optical imaging.
Hanene Ben Yedder, Ben Cardoen, Majid Shokoufi, Farid Golnaraghi, Ghassan Hamarneh

Comput Biol Med· August 2024

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DermSynth3D: Synthesis of in-the-wild annotated dermatology images.
Ashish Sinha, Jeremy Kawahara, Arezou Pakzad, Kumar Abhishek, Matthieu Ruthven, Ghassan Hamarneh

Med Image Anal· July 2024

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Multi-sample -mixup: richer, more realistic synthetic samples from a -series interpolant.
Kumar Abhishek, Colin J Brown, Ghassan Hamarneh

J Big Data· March 2024

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Evaluating the clinical utility of artificial intelligence assistance and its explanation on the glioma grading task.
Weina Jin, Mostafa Fatehi, Ru Guo, Ghassan Hamarneh

Artif Intell Med· February 2024

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Membrane contact site detection (MCS-DETECT) reveals dual control of rough mitochondria-ER contacts.
Ben Cardoen, Kurt R Vandevoorde, Guang Gao, Milene Ortiz-Silva, Parsa Alan, Ghassan Hamarneh

J Cell Biol· January 2024

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A survey on deep learning for skin lesion segmentation.
Zahra Mirikharaji, Kumar Abhishek, Alceu Bissoto, Catarina Barata, Sandra Avila, Ghassan Hamarneh

Med Image Anal· August 2023

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DataCurator.jl: efficient, portable and reproducible validation, curation and transformation of large heterogeneous datasets using human-readable recipes compiled into machine-verifiable templates.
Ben Cardoen, Hanene Ben Yedder, Sieun Lee, Ivan Robert Nabi, Ghassan Hamarneh

Bioinform Adv· June 2023

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Guidelines and evaluation of clinical explainable AI in medical image analysis.
Weina Jin, Xiaoxiao Li, Mostafa Fatehi, Ghassan Hamarneh

Med Image Anal· February 2023

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SPECHT: Self-tuning Plausibility based object detection Enables quantification of Conflict in Heterogeneous multi-scale microscopy.
Ben Cardoen, Timothy Wong, Parsa Alan, Sieun Lee, Joanne Aiko Matsubara, Ghassan Hamarneh

PLoS One· January 2023

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Generating post-hoc explanation from deep neural networks for multi-modal medical image analysis tasks.
Weina Jin, Xiaoxiao Li, Mostafa Fatehi, Ghassan Hamarneh

MethodsX· January 2023

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Plain-to-clear speech video conversion for enhanced intelligibility.
Shubam Sachdeva, Haoyao Ruan, Ghassan Hamarneh, Dawn M Behne, Allard Jongman

Int J Speech Technol· January 2023

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Basal Gp78-dependent mitophagy promotes mitochondrial health and limits mitochondrial ROS.
Parsa Alan, Kurt R Vandevoorde, Bharat Joshi, Ben Cardoen, Guang Gao, Ghassan Hamarneh

Cell Mol Life Sci· October 2022

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