Publications by authors named "Gloria Coruzzi"

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Antagonistic regulation of nitrogen and drought signaling mediated by NIN-like protein 7 transcription factor in .
Nathan R Johnson, Tomás C Moyano, Viviana Araus, Camilo Osorio, Ji Huang, Gloria M Coruzzi

Proc Natl Acad Sci U S A· January 2026

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Developmentally regulated genes drive phylogenomic splits in ovule evolution.
Veronica M Sondervan, Gil Eshel, Kranthi Varala, Samantha Frangos, Manpreet S Katari, Gloria M Coruzzi

Nat Commun· November 2025

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HHO5: A key orchestrator of dose-dependent nitrogen signaling pathways in Arabidopsis.
Will E Hinckley, Joseph Swift, Francisco Romei, Jorge P Muschietti, Shao Shan Carol Huang, Gloria M Coruzzi

bioRxiv· August 2025

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Model-to-crop conserved NUE Regulons enhance machine learning predictions of nitrogen use efficiency.
Ji Huang, Chia-Yi Cheng, Matthew D Brooks, Tim L Jeffers, Nathan M Doner, Gloria M Coruzzi

Plant Cell· May 2025

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Nitrate Sensing and Signaling in Plants: Comparative Insights and Nutritional Interactions.
Sandrine Ruffel, Jorge Del Rosario, Benoît Lacombe, Hatem Rouached, Rodrigo A Gutiérrez, Gloria M Coruzzi

Annu Rev Plant Biol· May 2025

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Transcription Factor (TF) validation using Dam-IT simultaneously captures genome-wide TF-DNA binding, direct gene regulation, and chromatin accessibility in plant cells.
Will E Hinckley, Austen Jack, Aurelia Li, Samantha Frangos, Angelo Pasquino, Gloria M Coruzzi

bioRxiv· May 2025

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BAD2matrix: Phylogenomic matrix concatenation, indel coding, and more.
Nelson R Salinas, Gil Eshel, Gloria M Coruzzi, Rob DeSalle, Michael Tessler

Appl Plant Sci· September 2024

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Phylogenetically diverse wild plant species use common biochemical strategies to thrive in the Atacama Desert.
Thomas Dussarrat, Ricardo Nilo-Poyanco, Tomás C Moyano, Sylvain Prigent, Tim L Jeffers, Gloria M Coruzzi

J Exp Bot· June 2024

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Corrigendum: Bipartite networks represent causality better than simple networks: Evidence, algorithms, and applications.
Bingran Shen, Gloria M Coruzzi, Dennis Shasha

Front Genet· June 2024

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Nitrogen sensing and regulatory networks: it's about time and space.
Carly M Shanks, Karin Rothkegel, Matthew D Brooks, Chia-Yi Cheng, José M Alvarez, Gloria M Coruzzi

Plant Cell· May 2024

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DamID-seq: A Genome-Wide DNA Methylation Method that Captures Both Transient and Stable TF-DNA Interactions in Plant Cells.
José M Alvarez, Will E Hinckley, Lauriebeth Leonelli, Matthew D Brooks, Gloria M Coruzzi

Methods Mol Biol· September 2023

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Building High-Confidence Gene Regulatory Networks by Integrating Validated TF-Target Gene Interactions Using ConnecTF.
Ji Huang, Manpreet S Katari, Che-Lun Juang, Gloria M Coruzzi, Matthew D Brooks

Methods Mol Biol· September 2023

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The genome of the Wollemi pine, a critically endangered "living fossil" unchanged since the Cretaceous, reveals extensive ancient transposon activity.
Dennis Wm Stevenson, Srividya Ramakrishnan, Cristiane de Santis Alves, Laís Araujo Coelho, Melissa Kramer, Gloria M Coruzzi

bioRxiv· August 2023

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EnsInfer: a simple ensemble approach to network inference outperforms any single method.
Bingran Shen, Gloria Coruzzi, Dennis Shasha

BMC Bioinformatics· March 2023

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Validation of a high-confidence regulatory network for gene-to-NUE phenotype in field-grown rice.
Carly M Shanks, Ji Huang, Chia-Yi Cheng, Hung-Jui S Shih, Matthew D Brooks, Gloria M Coruzzi

Front Plant Sci· November 2022

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The TARGET System: Rapid Identification of Direct Targets of Transcription Factors by Gene Regulation in Plant Cells.
Matthew D Brooks, Kelsey M Reed, Gabriel Krouk, Gloria M Coruzzi, Bastiaan O R Bargmann

Methods Mol Biol· October 2022

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The biology of time: dynamic responses of cell types to developmental, circadian and environmental cues.
Joseph Swift, Kathleen Greenham, Joseph R Ecker, Gloria M Coruzzi, C Robertson McClung

Plant J· February 2022

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Spatiotemporal analysis identifies ABF2 and ABF3 as key hubs of endodermal response to nitrate.
Orlando Contreras-López, Elena A Vidal, Eleodoro Riveras, José M Alvarez, Tomás C Moyano, Gloria M Coruzzi

Proc Natl Acad Sci U S A· January 2022

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Plant ecological genomics at the limits of life in the Atacama Desert.
Gil Eshel, Viviana Araus, Soledad Undurraga, Daniela C Soto, Carol Moraga, Gloria M Coruzzi

Proc Natl Acad Sci U S A· November 2021

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Evolutionarily informed machine learning enhances the power of predictive gene-to-phenotype relationships.
Chia-Yi Cheng, Ying Li, Kranthi Varala, Jessica Bubert, Ji Huang, Gloria M Coruzzi

Nat Commun· September 2021

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Time-Based Systems Biology Approaches to Capture and Model Dynamic Gene Regulatory Networks.
Jose M Alvarez, Matthew D Brooks, Joseph Swift, Gloria M Coruzzi

Annu Rev Plant Biol· June 2021

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GARP transcription factors repress Arabidopsis nitrogen starvation response via ROS-dependent and -independent pathways.
Alaeddine Safi, Anna Medici, Wojciech Szponarski, Florence Martin, Anne Clément-Vidal, Gloria Coruzzi

J Exp Bot· May 2021

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ConnecTF: A platform to integrate transcription factor-gene interactions and validate regulatory networks.
Matthew D Brooks, Che-Lun Juang, Manpreet Singh Katari, José M Alvarez, Angelo Pasquino, Gloria M Coruzzi

Plant Physiol· February 2021

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Author Correction: OutPredict: multiple datasets can improve prediction of expression and inference of causality.
Jacopo Cirrone, Matthew D Brooks, Richard Bonneau, Gloria M Coruzzi, Dennis E Shasha

Sci Rep· August 2020

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Nutrient dose-responsive transcriptome changes driven by Michaelis-Menten kinetics underlie plant growth rates.
Joseph Swift, Jose M Alvarez, Viviana Araus, Rodrigo A Gutiérrez, Gloria M Coruzzi

Proc Natl Acad Sci U S A· June 2020

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