Publications by authors named "Gordon G Simpson"

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Disruption of the mRNA m6A writer complex triggers autoimmunity in Arabidopsis.
Carey L Metheringham, Anjil K Srivastava, Peter Thorpe, Ankita Maji, Matthew T Parker, Gordon G Simpson

PLoS Genet· November 2025

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RNA splicing: a split consensus reveals two major 5' splice site classes.
Matthew T Parker, Sebastian M Fica, Gordon G Simpson

Open Biol· January 2025

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U6 snRNA m6A modification is required for accurate and efficient splicing of C. elegans and human pre-mRNAs.
Aykut Shen, Katarzyna Hencel, Matthew T Parker, Robyn Scott, Roberta Skukan, Gordon G Simpson

Nucleic Acids Res· August 2024

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Inter-species association mapping links splice site evolution to METTL16 and SNRNP27K.
Matthew T Parker, Sebastian M Fica, Geoffrey J Barton, Gordon G Simpson

Elife· October 2023

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U6 snRNA m6A modification is required for accurate and efficient cis- and trans-splicing of mRNAs.
Aykut Shen, Katarzyna Hencel, Matthew T Parker, Robyn Scott, Roberta Skukan, Gordon G Simpson

bioRxiv· September 2023

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mA modification of U6 snRNA modulates usage of two major classes of pre-mRNA 5' splice site.
Matthew T Parker, Beth K Soanes, Jelena Kusakina, Antoine Larrieu, Katarzyna Knop, Gordon G Simpson

Elife· November 2022

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Chromosome evolution and the genetic basis of agronomically important traits in greater yam.
Jessen V Bredeson, Jessica B Lyons, Ibukun O Oniyinde, Nneka R Okereke, Olufisayo Kolade, Gordon G Simpson

Nat Commun· April 2022

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Two zinc finger proteins with functions in mA writing interact with HAKAI.
Mi Zhang, Zsuzsanna Bodi, Katarzyna Mackinnon, Silin Zhong, Nathan Archer, Gordon G Simpson

Nat Commun· March 2022

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Widespread premature transcription termination of NLR genes by the spen protein FPA.
Matthew T Parker, Katarzyna Knop, Vasiliki Zacharaki, Anna V Sherwood, Daniel Tomé, Gordon G Simpson

Elife· April 2021

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2passtools: two-pass alignment using machine-learning-filtered splice junctions increases the accuracy of intron detection in long-read RNA sequencing.
Matthew T Parker, Katarzyna Knop, Geoffrey J Barton, Gordon G Simpson

Genome Biol· March 2021

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Nanopore direct RNA sequencing maps the complexity of Arabidopsis mRNA processing and mA modification.
Matthew T Parker, Katarzyna Knop, Anna V Sherwood, Nicholas J Schurch, Katarzyna Mackinnon, Gordon G Simpson

Elife· January 2020

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How well do RNA-Seq differential gene expression tools perform in a complex eukaryote? A case study in Arabidopsis thaliana.
Kimon Froussios, Nick J Schurch, Katarzyna Mackinnon, Marek Gierliński, Céline Duc, Gordon G Simpson

Bioinformatics· September 2019

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Crystal Structure of the SPOC Domain of the Arabidopsis Flowering Regulator FPA.
Yinglu Zhang, Katarzyna Rataj, Gordon G Simpson, Liang Tong

PLoS One· July 2017

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Erratum: How many biological replicates are needed in an RNA-seq experiment and which differential expression tool should you use?
Nicholas J Schurch, Pietà Schofield, Marek Gierliński, Christian Cole, Alexander Sherstnev, Gordon G Simpson

RNA· October 2016

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How many biological replicates are needed in an RNA-seq experiment and which differential expression tool should you use?
Nicholas J Schurch, Pietá Schofield, Marek Gierliński, Christian Cole, Alexander Sherstnev, Gordon G Simpson

RNA· June 2016

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The Arabidopsis epitranscriptome.
Rupert G Fray, Gordon G Simpson

Curr Opin Plant Biol· October 2015

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Enter exitrons.
Dorothee Staiger, Gordon G Simpson

Genome Biol· July 2015

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Improved annotation of 3' untranslated regions and complex loci by combination of strand-specific direct RNA sequencing, RNA-Seq and ESTs.
Nicholas J Schurch, Christian Cole, Alexander Sherstnev, Junfang Song, Céline Duc, Gordon G Simpson

PLoS One· January 2015

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Message ends: RNA 3' processing and flowering time control.
Katarzyna Rataj, Gordon G Simpson

J Exp Bot· February 2014

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The RNA-binding protein FPA regulates flg22-triggered defense responses and transcription factor activity by alternative polyadenylation.
Rebecca Lyons, Akira Iwase, Thomas Gänsewig, Alexander Sherstnev, Céline Duc, Gordon G Simpson

Sci Rep· October 2013

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Transcription termination and chimeric RNA formation controlled by Arabidopsis thaliana FPA.
Céline Duc, Alexander Sherstnev, Christian Cole, Geoffrey J Barton, Gordon G Simpson

PLoS Genet· October 2013

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Caffeoyl shikimate esterase (CSE) is an enzyme in the lignin biosynthetic pathway in Arabidopsis.
Ruben Vanholme, Igor Cesarino, Katarzyna Rataj, Yuguo Xiao, Lisa Sundin, Gordon G Simpson

Science· September 2013

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Direct sequencing of Arabidopsis thaliana RNA reveals patterns of cleavage and polyadenylation.
Alexander Sherstnev, Céline Duc, Christian Cole, Vasiliki Zacharaki, Csaba Hornyik, Gordon G Simpson

Nat Struct Mol Biol· August 2012

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Noncanonical translation initiation of the Arabidopsis flowering time and alternative polyadenylation regulator FCA.
Gordon G Simpson, Rebecca E Laurie, Paul P Dijkwel, Victor Quesada, Peter A Stockwell

Plant Cell· November 2010

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Alternative polyadenylation of antisense RNAs and flowering time control.
Csaba Hornyik, Céline Duc, Katarzyna Rataj, Lionel C Terzi, Gordon G Simpson

Biochem Soc Trans· August 2010

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