Publications by authors named "Gregory Forest"

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Charge distribution and helicity tune the binding of septin's amphipathic helix domain to membranes.
Christopher J Edelmaier, Stephen J Klawa, S Mahsa Mofidi, Qunzhao Wang, Shreeya Bhonge, M Gregory Forest

Biophys J· April 2025

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Flagellum Pumping Efficiency in Shear-Thinning Viscoelastic Fluids.
Aaron Barrett, Aaron L Fogelson, M Gregory Forest, Cole Gruninger, Sookkyung Lim

J Fluid Mech· November 2024

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Benchmarking the Immersed Boundary Method for Viscoelastic Flows.
Cole Gruninger, Aaron Barrett, Fuhui Fang, M Gregory Forest, Boyce E Griffith

J Comput Phys· June 2024

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Depletion Strategies for Crystallized Layers of Two-Dimensional Nanosheets to Enhance Lithium-Ion Conductivity in Polymer Nanocomposites.
Xiao-Han Wei, Zong-Pei Wu, Ao Peng, Xue-Ao Zhang, Holger Merlitz, M Gregory Forest

ACS Macro Lett· April 2024

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Transient crosslinking controls the condensate formation pathway within chromatin networks.
Zong-Pei Wu, Kerry S Bloom, M Gregory Forest, Xue-Zheng Cao

Phys Rev E· April 2024

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Polymer Modeling Reveals Interplay between Physical Properties of Chromosomal DNA and the Size and Distribution of Condensin-Based Chromatin Loops.
Daniel Kolbin, Benjamin L Walker, Caitlin Hult, John Donoghue Stanton, David Adalsteinsson, M Gregory Forest

Genes (Basel)· December 2023

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Computational Modeling Insights into Extreme Heterogeneity in COVID-19 Nasal Swab Data.
Leyi Zhang, Han Cao, Karen Medlin, Jason Pearson, Andreas C Aristotelous, M Gregory Forest

Viruses· December 2023

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Statistical Methods for Microrheology of Airway Mucus with Extreme Heterogeneity.
Neall Caughman, Micah Papanikolas, Matthew Markovetz, Ronit Freeman, David B Hill, M Gregory Forest

bioRxiv· November 2023

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The power of weak, transient interactions across biology: A paradigm of emergent behavior.
Paula A Vasquez, Ben Walker, Kerry Bloom, Daniel Kolbin, Neall Caughman, M Gregory Forest

Physica D· November 2023

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Modeling identifies variability in SARS-CoV-2 uptake and eclipse phase by infected cells as principal drivers of extreme variability in nasal viral load in the 48 h post infection.
Jason Pearson, Timothy Wessler, Alex Chen, Richard C Boucher, Ronit Freeman, M Gregory Forest

J Theor Biol· May 2023

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Antibody protection from SARS-CoV-2 respiratory tract exposure and infection.
Alex Chen, Timothy Wessler, M Gregory Forest

J Theor Biol· January 2023

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A hybrid discrete-continuum model of immune responses to SARS-CoV-2 infection in the lung alveolar region, with a focus on interferon induced innate response.
Andreas C Aristotelous, Alex Chen, M Gregory Forest

J Theor Biol· December 2022

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Mucus and mucus flake composition and abundance reflect inflammatory and infection status in cystic fibrosis.
Matthew R Markovetz, Ian C Garbarine, Cameron B Morrison, William J Kissner, Ian Seim, M Gregory Forest

J Cyst Fibros· November 2022

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Screening confinement of entanglements: Role of a self-propelling end inducing ballistic chain reptation.
Xue-Zheng Cao, Holger Merlitz, Chen-Xu Wu, M Gregory Forest

Phys Rev E· August 2022

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Aerosol Transport Modeling: The Key Link Between Lung Infections of Individuals and Populations.
Chantal Darquenne, Azadeh A T Borojeni, Mitchel J Colebank, M Gregory Forest, Balázs G Madas

Front Physiol· June 2022

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Modeling insights into SARS-CoV-2 respiratory tract infections prior to immune protection.
Alexander Chen, Timothy Wessler, Katherine Daftari, Kameryn Hinton, Richard C Boucher, M Gregory Forest

Biophys J· May 2022

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Simulating Dynamic Chromosome Compaction: Methods for Bridging In Silico to In Vivo.
Yunyan He, David Adalsteinsson, Benjamin Walker, Josh Lawrimore, M Gregory Forest

Methods Mol Biol· March 2022

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A PBPK model recapitulates early kinetics of anti-PEG antibody-mediated clearance of PEG-liposomes.
Anne M Talkington, Morgan D McSweeney, Timothy Wessler, Marielle K Rath, Zibo Li, M Gregory Forest

J Control Release· March 2022

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Experimental Data and PBPK Modeling Quantify Antibody Interference in PEGylated Drug Carrier Delivery.
Anne M Talkington, Timothy Wessler, Samuel K Lai, Yanguang Cao, M Gregory Forest

Bull Math Biol· November 2021

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Molecular Dynamics Simulations to Explore the Structure and Rheological Properties of Normal and Hyperconcentrated Airway Mucus.
Andrew G Ford, Xue-Zheng Cao, Micah J Papanikolas, Takafumi Kato, Richard C Boucher, M Gregory Forest

Stud Appl Math· November 2021

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Chain stiffness boosts active nanoparticle transport in polymer networks.
Xue-Zheng Cao, Holger Merlitz, Chen-Xu Wu, M Gregory Forest

Phys Rev E· May 2021

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Statistical mechanics of chromosomes: in vivo and in silico approaches reveal high-level organization and structure arise exclusively through mechanical feedback between loop extruders and chromatin substrate properties.
Yunyan He, Josh Lawrimore, Diana Cook, Elizabeth Erin Van Gorder, Solenn Claire De Larimat, M Gregory Forest

Nucleic Acids Res· November 2020

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LPS-binding IgG arrests actively motile Salmonella Typhimurium in gastrointestinal mucus.
Holly A Schroeder, Jay Newby, Alison Schaefer, Babu Subramani, Alan Tubbs, M Gregory Forest

Mucosal Immunol· September 2020

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Spatial heterogeneity of the cytosol revealed by machine learning-based 3D particle tracking.
Grace A McLaughlin, Erin M Langdon, John M Crutchley, Liam J Holt, M Gregory Forest

Mol Biol Cell· July 2020

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Observation of transition cascades in sheared liquid crystalline polymers.
Ryan J Fox, M Gregory Forest, Stephen J Picken, Theo J Dingemans

Soft Matter· April 2020

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