Publications by authors named "Guipeng Li"

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HydraRNA: a hybrid architecture based full-length RNA language model.
Guipeng Li, Feifei Jiang, Junhao Zhu, Huanhuan Cui, Zefeng Wang

Genome Biol· November 2025

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CANTAC-seq analysis reveals E2f1 and Otx1 coordinate zygotic genome activation in Xenopus tropicalis.
Huanhuan Cui, Weizheng Liang, Zhaoying Shi, Luming Zhang, Guipeng Li, Liang Fang

Nat Commun· November 2025

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Evolutionary Analysis of Transcriptional Regulation Mediated by Cdx2 in Rodents.
Weizheng Liang, Guipeng Li, Yukai Wang, Wencheng Wei, Rui Chen, Wei Li

Cell Prolif· July 2025

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Enhancing the Carrier Transport in Dielectric Passivation Layers via the Introduction of Trap States toward Improved CHNHPbI/Si Heterojunction Photodetectors.
Pengyu Chen, Jianxiang Huang, Guipeng Li, Hongping Li, Huimin Zhang, Chenglin Zhang, Yuan Liu

ACS Appl Mater Interfaces· April 2025

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Lentinan inhibits melanoma development by regulating the AKT/Nur77/Bcl-2 signaling axis.
Xuebin Lai, Yanling Chen, Rongjie Huang, Fukai Zhu, Lanqian Huang, Guipeng Li, Gulimiran Alitongbieke

J Cancer· January 2025

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Improved self-powered perovskite CHNHPbI/SnO heterojunction photodetectors achieved by interfacial engineering with a synergic effect.
Guipeng Li, Huimin Zhang, Weihao Qin, Mingming Chen

RSC Adv· January 2025

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Single cell multi-omics reveal intra-cell-line heterogeneity across human cancer cell lines.
Qionghua Zhu, Xin Zhao, Yuanhang Zhang, Yanping Li, Shang Liu, Yaling Huang, Zeyu Li, Yiqun Liu, Chuanyu Liu, Guipeng Li, Longqi Liu, Shiping Liu, Liang Fang, Liang Wu

Nat Commun· December 2023

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DG-Affinity: predicting antigen-antibody affinity with language models from sequences.
Ye Yuan, Qushuo Chen, Jun Mao, Guipeng Li, Xiaoyong Pan

BMC Bioinformatics· November 2023

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Mammalian splicing divergence is shaped by drift, buffering in , and a scaling law.
Xudong Zou, Bernhard Schaefke, Yisheng Li, Fujian Jia, Wei Sun, Guipeng Li, Weizheng Liang, Yanping Li, Liang Fang

Life Sci Alliance· April 2022

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Systematic Analysis of Monoallelic Gene Expression and Chromatin Accessibility Across Multiple Tissues in Hybrid Mice.
Weizheng Liang, Xudong Zou, Guipeng Li, Shaojie Zhou, Chi Tian

Front Cell Dev Biol· September 2021

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CASB: a concanavalin A-based sample barcoding strategy for single-cell sequencing.
Liang Fang, Guipeng Li, Zhiyuan Sun, Qionghua Zhu, Huanhuan Cui, Yunfei Li, Weizheng Liang

Mol Syst Biol· April 2021

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A novel cytogenetic method to image chromatin interactions at subkilobase resolution: Tn5 transposase-based fluorescence in situ hybridization.
Jing Niu, Xu Zhang, Guipeng Li, Pixi Yan, Qing Yan

J Genet Genomics· December 2020

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CIGAR-seq, a CRISPR/Cas-based method for unbiased screening of novel mRNA modification regulators.
Liang Fang, Wen Wang, Guipeng Li, Li Zhang, Jun Li

Mol Syst Biol· November 2020

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Integrative multi-omics analysis of a colon cancer cell line with heterogeneous Wnt activity revealed RUNX2 as an epigenetic regulator of EMT.
Hongyang Yi, Guipeng Li, Yongkang Long, Weizheng Liang, Huanhuan Cui, Yunfei Li, Liang Fang

Oncogene· July 2020

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Pan-tissue analysis of allelic alternative polyadenylation suggests widespread functional regulation.
Yisheng Li, Bernhard Schaefke, Xudong Zou, Min Zhang, Florian Heyd, Guipeng Li, Weizheng Liang, Yunfei Li, Liang Fang

Mol Syst Biol· April 2020

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Full-length transcriptome reconstruction reveals a large diversity of RNA and protein isoforms in rat hippocampus.
Xi Wang, Xintian You, Julian D Langer, Jingyi Hou, Fiona Rupprecht, Liang Fang, Guipeng Li

Nat Commun· November 2019

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HiCDB: a sensitive and robust method for detecting contact domain boundaries.
Fengling Chen, Guipeng Li, Michael Q Zhang, Yang Chen

Nucleic Acids Res· November 2018

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Alterations of specific chromatin conformation affect ATRA-induced leukemia cell differentiation.
Yanjian Li, Yi He, Zhengyu Liang, Yang Wang, Fengling Chen, Guipeng Li

Cell Death Dis· February 2018

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BL-Hi-C is an efficient and sensitive approach for capturing structural and regulatory chromatin interactions.
Zhengyu Liang, Guipeng Li, Zejun Wang, Mohamed Nadhir Djekidel, Yanjian Li

Nat Commun· November 2017

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ChIA-PET2: a versatile and flexible pipeline for ChIA-PET data analysis.
Guipeng Li, Yang Chen, Michael P Snyder, Michael Q Zhang

Nucleic Acids Res· January 2017

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3CPET: finding co-factor complexes from ChIA-PET data using a hierarchical Dirichlet process.
Mohamed Nadhir Djekidel, Zhengyu Liang, Qi Wang, Zhirui Hu, Guipeng Li

Genome Biol· December 2015

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ModuleRole: a tool for modulization, role determination and visualization in protein-protein interaction networks.
Guipeng Li, Ming Li, Yiwei Zhang, Dong Wang, Rong Li

PLoS One· December 2014

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