Publications by authors named "Guoxian Yu"

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ChromInSight: Revealing DNA Double-Strand Breaks Through Chromatin Structural Insights With an Interpretable Graph Neural Network Framework.
Kang Xu, Zongyuan Yu, Canzhuang Sun, Conglin Gou, Jiangyue Zhu, Guoxian Yu

Adv Sci (Weinh)· September 2025

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FmH2ST: foundation model-based spatial transcriptomics generation from histological images.
Yuequn Wang, Jun Wang, Yanyu Xu, Ning Liu, Bin Liu, Yuliang Li, Guoxian Yu

Nucleic Acids Res· September 2025

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AN-IHP: Incompatible Herb Pairs Prediction by Attention Networks.
Longfei Ma, Cong Su, Jun Wang, Xin Li, Rong Sun, Guoxian Yu

IEEE Trans Comput Biol Bioinform· January 2025

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Cancer molecular subtyping using limited multi-omics data with missingness.
Yongqi Bu, Jiaxuan Liang, Zhen Li, Jianbo Wang, Jun Wang, Guoxian Yu

PLoS Comput Biol· December 2024

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Microbiome and metabolome analysis in smoking and non-smoking pancreatic ductal adenocarcinoma patients.
Xiao Liang, Yiqing Zhu, Yongqi Bu, Min Dong, Guoming Zhang, Haoyun Tang, Xinyu Chen, Guoxian Yu

BMC Microbiol· December 2024

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GWASTool: A web pipeline for detecting SNP-phenotype associations.
Xin Wang, Beibei Xin, Maozu Guo, Guoxian Yu, Jun Wang

Fundam Res· July 2024

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Single-cell RNA-seq data clustering by deep information fusion.
Liangrui Ren, Jun Wang, Wei Li, Maozu Guo, Guoxian Yu

Brief Funct Genomics· March 2024

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Personalized Federated Few-Shot Learning.
Yunfeng Zhao, Guoxian Yu, Jun Wang, Carlotta Domeniconi, Maozu Guo

IEEE Trans Neural Netw Learn Syst· February 2024

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HetFCM: functional co-module discovery by heterogeneous network co-clustering.
Haojiang Tan, Maozu Guo, Jian Chen, Jun Wang, Guoxian Yu

Nucleic Acids Res· February 2024

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Gradient-Based Local Causal Structure Learning.
Jiaxuan Liang, Jun Wang, Guoxian Yu, Carlotta Domeniconi, Xiangliang Zhang

IEEE Trans Cybern· January 2024

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A multi-omics study to investigate the progression of the Correa pathway in gastric mucosa in the context of cirrhosis.
Ruiguang Ma, Qian Li, Guoxian Yu, Jun Wang, Yueyue Li

Gut Pathog· September 2023

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Cooperative driver pathways discovery by multiplex network embedding.
Jun Wang, Xi Chen, Zhengtian Wu, Maozu Guo, Guoxian Yu

Brief Bioinform· May 2023

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scMCs: a framework for single-cell multi-omics data integration and multiple clusterings.
Liangrui Ren, Jun Wang, Zhao Li, Qingzhong Li, Guoxian Yu

Bioinformatics· April 2023

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scGGAN: single-cell RNA-seq imputation by graph-based generative adversarial network.
Zimo Huang, Jun Wang, Xudong Lu, Azlan Mohd Zain, Guoxian Yu

Brief Bioinform· March 2023

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Lung Cancer Subtype Diagnosis by Fusing Image-Genomics Data and Hybrid Deep Networks.
Xingze Wang, Guoxian Yu, Zhongmin Yan, Lin Wan, Wei Wang

IEEE/ACM Trans Comput Biol Bioinform· February 2023

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Lung cancer subtype diagnosis using weakly-paired multi-omics data.
Xingze Wang, Guoxian Yu, Jun Wang, Azlan Mohd Zain, Wei Guo

Bioinformatics· November 2022

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Tissue Specificity Based Isoform Function Prediction.
Guoxian Yu, Qiuyue Huang, Xiangliang Zhang, Maozu Guo, Jun Wang

IEEE/ACM Trans Comput Biol Bioinform· October 2022

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Weighted deep factorizing heterogeneous molecular network for genome-phenome association prediction.
Haojiang Tan, Sichao Qiu, Jun Wang, Guoxian Yu, Wei Guo

Methods· September 2022

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Isoform function prediction by Gene Ontology embedding.
Sichao Qiu, Guoxian Yu, Xudong Lu, Carlotta Domeniconi, Maozu Guo

Bioinformatics· September 2022

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ELSSI: parallel SNP-SNP interactions detection by ensemble multi-type detectors.
Xin Wang, Xia Cao, Yuantao Feng, Maozu Guo, Guoxian Yu

Brief Bioinform· July 2022

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EpiMC: Detecting Epistatic Interactions Using Multiple Clusterings.
Jun Wang, Huiling Zhang, Wei Ren, Maozu Guo, Guoxian Yu

IEEE/ACM Trans Comput Biol Bioinform· February 2022

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EpiHNet: Detecting epistasis by heterogeneous molecule network.
Xin Wang, Huiling Zhang, Jun Wang, Guoxian Yu, Lizhen Cui

Methods· February 2022

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DMIL-IsoFun: predicting isoform function using deep multi-instance learning.
Guoxian Yu, Guangjie Zhou, Xiangliang Zhang, Carlotta Domeniconi, Maozu Guo

Bioinformatics· December 2021

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Incorporation of Lipids into Wheat Bran Cellulose/Wheat Gluten Composite Film Improves Its Water Resistance Properties.
Guanghui Shen, Guoxian Yu, Hejun Wu, Shanshan Li, Xiaoyan Hou

Membranes (Basel)· December 2021

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IsoDA: Isoform-Disease Association Prediction by Multiomics Data Fusion.
Qiuyue Huang, Jun Wang, Xiangliang Zhang, Maozu Guo, Guoxian Yu

J Comput Biol· August 2021

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