Publications by authors named "Hashem Koohy"

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Early lymph node T follicular helper cell signalling hub drives influenza vaccine response in an ancestrally diverse cohort.
Jacqueline H Y Siu, Sofia Coelho, Aime Palomeras, Sandra Belij-Rammerstorfer, Ninisha Barman, Hashem Koohy

EBioMedicine· December 2025

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Quantifying conformational changes in the TCR:pMHC-I binding interface.
Benjamin McMaster, Christopher J Thorpe, Jamie Rossjohn, Charlotte M Deane, Hashem Koohy

Front Immunol· December 2024

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Can AlphaFold's breakthrough in protein structure help decode the fundamental principles of adaptive cellular immunity?
Benjamin McMaster, Christopher Thorpe, Graham Ogg, Charlotte M Deane, Hashem Koohy

Nat Methods· May 2024

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Tracking in situ checkpoint inhibitor-bound target T cells in patients with checkpoint-induced colitis.
Tarun Gupta, Agne Antanaviciute, Chloe Hyun-Jung Lee, Rosana Ottakandathil Babu, Anna Aulicino, Hashem Koohy

Cancer Cell· May 2024

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A comparison of clustering models for inference of T cell receptor antigen specificity.
Dan Hudson, Alex Lubbock, Mark Basham, Hashem Koohy

Immunoinformatics (Amst)· March 2024

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identification of vaccine targets for 2019-nCoV.
Chloe H Lee, Hashem Koohy

F1000Res· January 2024

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A robust deep learning workflow to predict CD8 + T-cell epitopes.
Chloe H Lee, Jaesung Huh, Paul R Buckley, Myeongjun Jang, Mariana Pereira Pinho, Hashem Koohy

Genome Med· September 2023

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Can we predict T cell specificity with digital biology and machine learning?
Dan Hudson, Ricardo A Fernandes, Mark Basham, Graham Ogg, Hashem Koohy

Nat Rev Immunol· August 2023

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Group A induces CD1a-autoreactive T cells and promotes psoriatic inflammation.
Yi-Ling Chen, Jessica Soo Weei Ng, Rosana Ottakandathil Babu, Jeongmin Woo, Janina Nahler, Hashem Koohy

Sci Immunol· June 2023

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A systems approach evaluating the impact of SARS-CoV-2 variant of concern mutations on CD8+ T cell responses.
Paul R Buckley, Chloe H Lee, Agne Antanaviciute, Alison Simmons, Hashem Koohy

Immunother Adv· March 2023

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Legislate against threats to women's education.
Hashem Koohy

Nature· February 2023

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HLA variants have different preferences to present proteins with specific molecular functions which are complemented in frequent haplotypes.
Vadim Karnaukhov, Wayne Paes, Isaac B Woodhouse, Thomas Partridge, Annalisa Nicastri, Hashem Koohy

Front Immunol· January 2023

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Decitabine increases neoantigen and cancer testis antigen expression to enhance T-cell-mediated toxicity against glioblastoma.
Ruichong Ma, Margarida Rei, Isaac Woodhouse, Katherine Ferris, Sophie Kirschner, Hashem Koohy

Neuro Oncol· December 2022

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HLA-dependent variation in SARS-CoV-2 CD8  T cell cross-reactivity with human coronaviruses.
Paul R Buckley, Chloe H Lee, Mariana Pereira Pinho, Rosana Ottakandathil Babu, Jeongmin Woo, Hashem Koohy

Immunology· May 2022

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Evaluating performance of existing computational models in predicting CD8+ T cell pathogenic epitopes and cancer neoantigens.
Paul R Buckley, Chloe H Lee, Ruichong Ma, Isaac Woodhouse, Jeongmin Woo, Hashem Koohy

Brief Bioinform· May 2022

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Dual RNA sequencing reveals dendritic cell reprogramming in response to typhoidal Salmonella invasion.
Anna Aulicino, Agne Antanaviciute, Joe Frost, Ana Sousa Geros, Esther Mellado, Hashem Koohy

Commun Biol· February 2022

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SARS-CoV-2 peptides bind to NKG2D and increase NK cell activity.
Hanna Kim, Jae-Eun Byun, Suk Ran Yoon, Hashem Koohy, Haiyoung Jung

Cell Immunol· January 2022

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Predicting Cross-Reactivity and Antigen Specificity of T Cell Receptors.
Chloe H Lee, Mariolina Salio, Giorgio Napolitani, Graham Ogg, Alison Simmons, Hashem Koohy

Front Immunol· May 2021

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Chromatin accessibility governs the differential response of cancer and T cells to arginine starvation.
Nicholas T Crump, Andreas V Hadjinicolaou, Meng Xia, John Walsby-Tickle, Uzi Gileadi, Hashem Koohy

Cell Rep· May 2021

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Spatiotemporal analysis of human intestinal development at single-cell resolution.
David Fawkner-Corbett, Agne Antanaviciute, Kaushal Parikh, Marta Jagielowicz, Ana Sousa Gerós, Hashem Koohy

Cell· February 2021

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HLA binding of self-peptides is biased towards proteins with specific molecular functions.
Vadim Karnaukhov, Wayne Paes, Isaac B Woodhouse, Thomas Partridge, Annalisa Nicastri, Hashem Koohy

bioRxiv· February 2021

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Potential CD8+ T Cell Cross-Reactivity Against SARS-CoV-2 Conferred by Other Coronavirus Strains.
Chloe H Lee, Mariana Pereira Pinho, Paul R Buckley, Isaac B Woodhouse, Graham Ogg, Hashem Koohy

Front Immunol· December 2020

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Single-cell atlas of colonic CD8 T cells in ulcerative colitis.
Daniele Corridoni, Agne Antanaviciute, Tarun Gupta, David Fawkner-Corbett, Anna Aulicino, Hashem Koohy

Nat Med· September 2020

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Discovery of a CD10-negative B-progenitor in human fetal life identifies unique ontogeny-related developmental programs.
Sorcha O'Byrne, Natalina Elliott, Siobhan Rice, Gemma Buck, Nicholas Fordham, Hashem Koohy

Blood· September 2019

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Colonic epithelial cell diversity in health and inflammatory bowel disease.
Kaushal Parikh, Agne Antanaviciute, David Fawkner-Corbett, Marta Jagielowicz, Anna Aulicino, Hashem Koohy

Nature· March 2019

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