Publications by authors named "Hokeun Kim"

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A Robust Strategy for High-Throughput and Deep Proteomics by Combining Narrow-Window Data-Independent Acquisition and Isobaric Mass Tagging.
Chaewon Kang, Jiwon Hong, Hokeun Kim, JeongSu Jo, Jun-Hyeong Seo

J Proteome Res· December 2025

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Correction: Proteogenomic characterization of molecular and cellular targets for treatment‑resistant subtypes in locally advanced cervical cancers.
Do Young Hyeon, Dowoon Nam, Hye-Jin Shin, Juhee Jeong, Eunsoo Jung, Jong Kwang Kim, Su-Jin Kim, Hokeun Kim, Suhwan Kim, Duk Ki Kim, Sang Soo Kim, Joo-Young Kim

Mol Cancer· November 2025

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Correction: Proteogenomic characterization of molecular and cellular targets for treatment‑resistant subtypes in locally advanced cervical cancers.
Do Young Hyeon, Dowoon Nam, Hye-Jin Shin, Juhee Jeong, Eunsoo Jung, Jong Kwang Kim, Su-Jin Kim, Hokeun Kim, Suhwan Kim, Duk Ki Kim, Sang Soo Kim, Joo-Young Kim

Mol Cancer· June 2025

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Proteogenomic characterization of molecular and cellular targets for treatment-resistant subtypes in locally advanced cervical cancers.
Do Young Hyeon, Dowoon Nam, Hye-Jin Shin, Juhee Jeong, Eunsoo Jung, Jong Kwang Kim, Su-Jin Kim, Hokeun Kim, Suhwan Kim, Duk Ki Kim, Sang Soo Kim, Joo-Young Kim

Mol Cancer· March 2025

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Wideband PRM: Highly Accurate and Sensitive Method for High-Throughput Targeted Proteomics.
Dowoon Nam, Minyoung Ji, Chaewon Kang, Hokeun Kim, Hyunju Yang

Anal Chem· June 2024

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Targeted proteomics data interpretation with DeepMRM.
Jungkap Park, Christopher Wilkins, Dmitry Avtonomov, Jiwon Hong, Seunghoon Back, Hokeun Kim, Sangtae Kim

Cell Rep Methods· July 2023

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Author Correction: Proteogenomic landscape of human pancreatic ductal adenocarcinoma in an Asian population reveals tumor cell-enriched and immune-rich subtypes.
Do Young Hyeon, Dowoon Nam, Youngmin Han, Duk Ki Kim, Gibeom Kim, Daeun Kim, Su-Jin Kim, Hokeun Kim, Chang Rok Kim, Yong Ryoul Kim, Hongbeom Kim, Min-Sik Kim

Nat Cancer· May 2023

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Proteogenomic landscape of human pancreatic ductal adenocarcinoma in an Asian population reveals tumor cell-enriched and immune-rich subtypes.
Do Young Hyeon, Dowoon Nam, Youngmin Han, Duk Ki Kim, Gibeom Kim, Daeun Kim, Su-Jin Kim, Hokeun Kim, Chang Rok Kim, Yong Ryoul Kim, Hongbeom Kim, Min-Sik Kim

Nat Cancer· February 2023

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Novel Online Three-Dimensional Separation Expands the Detectable Functional Landscape of Cellular Phosphoproteome.
Chaewon Kang, Sunghyun Huh, Dowoon Nam, Hokeun Kim, Jiwon Hong

Anal Chem· September 2022

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Aβ-induced mitochondrial dysfunction in neural progenitors controls KDM5A to influence neuronal differentiation.
Dong Kyu Kim, Hyobin Jeong, Jingi Bae, Moon-Yong Cha, Moonkyung Kang, Hokeun Kim, Jong-Il Kim, Yeon-Soo Kim

Exp Mol Med· September 2022

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Label-Free Quantitative Proteome Profiling of Cerebrospinal Fluid from a Rat Stroke Model with Stem Cell Therapy.
Junseok W Hur, Min-Sik Kim, Se-Yeon Oh, Ho-Young Kang, Jingi Bae, Hokeun Kim

Cell Transplant· February 2022

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PASS-DIA: A Data-Independent Acquisition Approach for Discovery Studies.
Dong-Gi Mun, Santosh Renuse, Mayank Saraswat, Anil Madugundu, Savita Udainiya, Hokeun Kim

Anal Chem· November 2020

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Prognostic plasma protein panel for Aβ deposition in the brain in Alzheimer's disease.
Jong-Chan Park, Sun-Ho Han, Hangyeore Lee, Hyobin Jeong, Min Soo Byun, Hokeun Kim, Yu Kyeong Kim

Prog Neurobiol· December 2019

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Accurate Precursor Mass Assignment Improves Peptide Identification in Data-Independent Acquisition Mass Spectrometry.
Dong-Gi Mun, Dowoon Nam, Hokeun Kim, Akhilesh Pandey, Sang-Won Lee

Anal Chem· July 2019

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Proteogenomic Characterization of Human Early-Onset Gastric Cancer.
Dong-Gi Mun, Jinhyuk Bhin, Sangok Kim, Hyunwoo Kim, Jae Hun Jung, Hokeun Kim, Su-Jin Kim, Jieun Kim, Byung Sik Kim, Dae Hwan Kim, Jaesang Kim, Kwang Pyo Kim, Hark Kyun Kim

Cancer Cell· January 2019

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A mitochondrial proteome profile indicative of type 2 diabetes mellitus in skeletal muscles.
Sehyun Chae, Su-Jin Kim, Young Do Koo, Jung Hwa Lee, Hokeun Kim, Yong-Hak Kim

Exp Mol Med· September 2018

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Multiplexed Post-Experimental Monoisotopic Mass Refinement (mPE-MMR) to Increase Sensitivity and Accuracy in Peptide Identifications from Tandem Mass Spectra of Cofragmentation.
Inamul Hasan Madar, Seung-Ik Ko, Hokeun Kim, Dong-Gi Mun, Sangtae Kim

Anal Chem· January 2017

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Efficient Exploitation of Separation Space in Two-Dimensional Liquid Chromatography System for Comprehensive and Efficient Proteomic Analyses.
Hangyeore Lee, Dong-Gi Mun, Jeong Eun So, Jingi Bae, Hokeun Kim

Anal Chem· December 2016

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Comprehensive Proteome Profiling of Platelet Identified a Protein Profile Predictive of Responses to An Antiplatelet Agent Sarpogrelate.
Hangyeore Lee, Sehyun Chae, Jisook Park, Jingi Bae, Eun-Bi Go, Su-Jin Kim, Hokeun Kim

Mol Cell Proteomics· November 2016

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Integrated analysis of global proteome, phosphoproteome, and glycoproteome enables complementary interpretation of disease-related protein networks.
Jong-Moon Park, Ji-Hwan Park, Dong-Gi Mun, Jingi Bae, Jae Hun Jung, Hokeun Kim, Hark Kyun Kim, Kwang Pyo Kim

Sci Rep· December 2015

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A simple dual online ultra-high pressure liquid chromatography system (sDO-UHPLC) for high throughput proteome analysis.
Hangyeore Lee, Dong-Gi Mun, Jingi Bae, Hokeun Kim, Se Yeon Oh

Analyst· August 2015

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Compact variant-rich customized sequence database and a fast and sensitive database search for efficient proteogenomic analyses.
Heejin Park, Junwoo Bae, Hyunwoo Kim, Sangok Kim, Hokeun Kim, Hark Kyun Kim

Proteomics· December 2014

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Estimating influence of cofragmentation on peptide quantification and identification in iTRAQ experiments by simulating multiplexed spectra.
Honglan Li, Kyu-Baek Hwang, Dong-Gi Mun, Hokeun Kim, Hangyeore Lee

J Proteome Res· July 2014

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A protein profile of visceral adipose tissues linked to early pathogenesis of type 2 diabetes mellitus.
Su-Jin Kim, Sehyun Chae, Hokeun Kim, Dong-Gi Mun, Seunghoon Back

Mol Cell Proteomics· March 2014

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A fully automated dual-online multifunctional ultrahigh pressure liquid chromatography system for high-throughput proteomics analysis.
Hangyeore Lee, Jung Hwa Lee, Hokeun Kim, Su-Jin Kim, Jingi Bae, Hark Kyun Kim

J Chromatogr A· February 2014

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