Publications by authors named "Holger Hoos"

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MO-SMAC: Multi-objective Sequential Model-based Algorithm Configuration.
Jeroen G Rook, Carolin Benjamins, Jakob Bossek, Heike Trautmann, Holger H Hoos

Evol Comput· March 2025

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The Bigger Fish: A Comparison of Meta-Learning QSAR Models on Low-Resourced Aquatic Toxicity Regression Tasks.
Thalea Schlender, Markus Viljanen, Jan N van Rijn, Felix Mohr, Willie Jgm Peijnenburg, Holger H Hoos

Environ Sci Technol· November 2023

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VPint: value propagation-based spatial interpolation.
Laurens Arp, Mitra Baratchi, Holger Hoos

Data Min Knowl Discov· June 2022

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Predicting the 9-year course of mood and anxiety disorders with automated machine learning: A comparison between auto-sklearn, naïve Bayes classifier, and traditional logistic regression.
Wessel A van Eeden, Chuan Luo, Albert M van Hemert, Ingrid V E Carlier, Brenda W Penninx, Holger Hoos

Psychiatry Res· May 2021

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The CLAIRE COVID-19 initiative: approach, experiences and recommendations.
Gianluca Bontempi, Ricardo Chavarriaga, Hans eD Canck, Emanuela Girardi, Holger Hoos

Ethics Inf Technol· February 2021

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Successive Statistical and Structure-Based Modeling to Identify Chemically Novel Kinase Inhibitors.
Lindsey Burggraaff, Eelke B Lenselink, Willem Jespers, Jesper van Engelen, Brandon J Bongers, Holger H Hoos

J Chem Inf Model· September 2020

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Automatic Configuration of Multi-Objective Local Search Algorithms for Permutation Problems.
Aymeric Blot, Marie-Éléonore Kessaci, Laetitia Jourdan, Holger H Hoos

Evol Comput· July 2019

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Automated Algorithm Selection: Survey and Perspectives.
Pascal Kerschke, Holger H Hoos, Frank Neumann, Heike Trautmann

Evol Comput· July 2019

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Leveraging TSP Solver Complementarity through Machine Learning.
Pascal Kerschke, Lars Kotthoff, Jakob Bossek, Holger H Hoos, Heike Trautmann

Evol Comput· August 2017

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Filling Your Shelves: Synthesizing Diverse Style-Preserving Artifact Arrangements.
Lucas Majerowicz, Ariel Shamir, Alla Sheffer, Holger H Hoos

IEEE Trans Vis Comput Graph· November 2014

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Enhanced flowType/RchyOptimyx: a BioConductor pipeline for discovery in high-dimensional cytometry data.
Kieran O'Neill, Adrin Jalali, Nima Aghaeepour, Holger Hoos, Ryan R Brinkman

Bioinformatics· May 2014

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Ensemble-based prediction of RNA secondary structures.
Nima Aghaeepour, Holger H Hoos

BMC Bioinformatics· April 2013

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Critical assessment of automated flow cytometry data analysis techniques.
Nima Aghaeepour, Greg Finak, , , Holger Hoos

Nat Methods· March 2013

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RchyOptimyx: cellular hierarchy optimization for flow cytometry.
Nima Aghaeepour, Adrin Jalali, Kieran O'Neill, Pratip K Chattopadhyay, Mario Roederer, Holger H Hoos

Cytometry A· December 2012

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Early immunologic correlates of HIV protection can be identified from computational analysis of complex multivariate T-cell flow cytometry assays.
Nima Aghaeepour, Pratip K Chattopadhyay, Anuradha Ganesan, Kieran O'Neill, Habil Zare, Holger H Hoos

Bioinformatics· April 2012

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Analysis of energy-based algorithms for RNA secondary structure prediction.
Monir Hajiaghayi, Anne Condon, Holger H Hoos

BMC Bioinformatics· February 2012

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Rapid cell population identification in flow cytometry data.
Nima Aghaeepour, Radina Nikolic, Holger H Hoos, Ryan R Brinkman

Cytometry A· January 2011

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Computational approaches for RNA energy parameter estimation.
Mirela Andronescu, Anne Condon, Holger H Hoos, David H Mathews, Kevin P Murphy

RNA· December 2010

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RNA STRAND: the RNA secondary structure and statistical analysis database.
Mirela Andronescu, Vera Bereg, Holger H Hoos, Anne Condon

BMC Bioinformatics· August 2008

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Correlation between the secondary structure of pre-mRNA introns and the efficiency of splicing in Saccharomyces cerevisiae.
Sanja Rogic, Ben Montpetit, Holger H Hoos, Alan K Mackworth, Bf Francis Ouellette

BMC Genomics· July 2008

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A replica exchange Monte Carlo algorithm for protein folding in the HP model.
Chris Thachuk, Alena Shmygelska, Holger H Hoos

BMC Bioinformatics· September 2007

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Efficient parameter estimation for RNA secondary structure prediction.
Mirela Andronescu, Anne Condon, Holger H Hoos, David H Mathews, Kevin P Murphy

Bioinformatics· July 2007

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An adaptive bin framework search method for a beta-sheet protein homopolymer model.
Alena Shmygelska, Holger H Hoos

BMC Bioinformatics· April 2007

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Computational RNA secondary structure design: empirical complexity and improved methods.
Rosalía Aguirre-Hernández, Holger H Hoos, Anne Condon

BMC Bioinformatics· January 2007

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A thermodynamic approach to designing structure-free combinatorial DNA word sets.
Michael R Shortreed, Seo Bong Chang, DongGee Hong, Maggie Phillips, Bridget Campion, Holger H Hoos

Nucleic Acids Res· December 2005

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