Publications by authors named "Hongyi Xin"

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Simultaneously infer cell pseudotime, velocity field, and gene interaction from multi-branch scRNA-seq data with scPN.
Zhen Zhou, Jiachen Li, Hongyi Xin, Xiaoyong Pan, Hong-Bin Shen

NAR Genom Bioinform· December 2025

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A novel deep learning system for STEMI prognostic prediction from multi-sequence cardiac magnetic resonance.
Yifan Chen, Meng Jiang, Chao Xia, Hang Zhao, Panpan Ke, Hongyi Xin, Xinli Li

Sci Bull (Beijing)· December 2025

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PLVAP mediates the regulation of the tumour microenvironment in early-stage lung adenocarcinoma.
Linshan Xie, Mengting Sun, Yujie Zheng, Zezhong Yu, Hui Kong, Hongyi Xin

Clin Transl Med· December 2025

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Efficient trace reconstruction in DNA storage systems using bidirectional beam search.
Zhenhao Gu, Hongyi Xin, Puru Sharma, Gary Yipeng Goh, Limsoon Wong

iScience· November 2025

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SODA: Detecting COVID-19 in Chest X-Rays With Semi-Supervised Open Set Domain Adaptation.
Jieli Zhou, Baoyu Jing, Zeya Wang, Hongyi Xin, Hanghang Tong

IEEE/ACM Trans Comput Biol Bioinform· July 2025

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Transcriptomic Analysis of the Spleen from Asian Seabass () Infected with Infectious Spleen and Kidney Necrosis Virus.
Hong-Yi Xin, Lim Xin Ying, Lee Ching Pei Carmen, Mookkan Prabakaran

Viruses· May 2025

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Large language model answers medical questions about standard pathology reports.
Anqi Wang, Jieli Zhou, Peng Zhang, Haotian Cao, Hongyi Xin, Xinyun Xu

Front Med (Lausanne)· September 2024

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Gut microbiota plays a significant role in gout.
Zhi-Peng Feng, Xiao-Yan Wang, Hong-Yi Xin, Shao-Li Huang, Hong-Yu Huang, Qiang Xin, Hong-Wu Xin

J Med Microbiol· April 2024

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Perspective view of allogeneic IgG tumor immunotherapy.
Ying Liu, Yuanyi Huang, Hong-Wei Cui, YingYing Wang, ZhaoWu Ma, Hong-Yi Xin, Hong-Wu Xin

Cancer Cell Int· March 2024

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CRCS: An automatic image processing pipeline for hormone level analysis of Cushing's disease.
Haiyue Li, Jing Xie, Jialin Song, Cheng Jin, Hongyi Xin

Methods· February 2024

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Spatial transcriptomics reveals heterogeneity of histological subtypes between lepidic and acinar lung adenocarcinoma.
Linshan Xie, Hui Kong, Jinjie Yu, Mengting Sun, Shaohua Lu, Hongyi Xin

Clin Transl Med· February 2024

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Recent Advances on the Molecular Mechanism and Clinical Trials of Venous Thromboembolism.
Shao-Li Huang, Hong-Yi Xin, Xiao-Yan Wang, Guang-Gui Feng, Fu-Qing Wu, Zhou Xing, Hong-Wu Xin

J Inflamm Res· December 2023

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Deep learning of endoscopic features for the assessment of neoadjuvant therapy response in locally advanced rectal cancer.
Anqi Wang, Jieli Zhou, Gang Wang, Beibei Zhang, Hongyi Xin

Asian J Surg· September 2023

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Oncolytic virotherapy evolved into the fourth generation as tumor immunotherapy.
Xianwang Wang, Yihua Shen, Xingxia Wan, Xiaoqing Hu, Wen-Qi Cai, Qiang Xin, Hong-Yi Xin, Hong-Wu Xin

J Transl Med· July 2023

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Nanoparticles advanced from preclinical studies to clinical trials for lung cancer therapy.
Yifan Liu, Wenxu Cheng, HongYi Xin, Ran Liu, Qinqi Wang, HongWu Xin

Cancer Nanotechnol· March 2023

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The microbiota regulates hematopoietic stem and progenitor cell development by mediating inflammatory signals in the niche.
Dan Zhong, Haowei Jiang, Chengzhuo Zhou, Abrar Ahmed, Hongji Li, Hongyi Xin

Cell Rep· February 2023

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TIST: Transcriptome and Histopathological Image Integrative Analysis for Spatial Transcriptomics.
Yiran Shan, Qian Zhang, Wenbo Guo, Yanhong Wu, Yuxin Miao, Hongyi Xin

Genomics Proteomics Bioinformatics· October 2022

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Gut microbiota homeostasis restoration may become a novel therapy for breast cancer.
Zhi-Peng Feng, Hong-Yi Xin, Ze-Wei Zhang, Chen-Guang Liu, Zheng Yang, Hong-Wu Xin

Invest New Drugs· June 2021

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Bispecific T cell engagers and their synergistic tumor immunotherapy with oncolytic viruses.
Qi Huang, Wen-Qi Cai, Zi-Wen Han, Mo-Yu Wang, Yang Zhou, Qiang Xin, Hong-Yi Xin, Hong-Wu Xin

Am J Cancer Res· June 2021

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Artificial-cell-type aware cell-type classification in CITE-seq.
Qiuyu Lian, Hongyi Xin, Jianzhu Ma, Liza Konnikova, Wei Chen

Bioinformatics· July 2020

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GMM-Demux: sample demultiplexing, multiplet detection, experiment planning, and novel cell-type verification in single cell sequencing.
Hongyi Xin, Qiuyu Lian, Yale Jiang, Jiadi Luo, Xinjun Wang

Genome Biol· July 2020

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BREM-SC: a bayesian random effects mixture model for joint clustering single cell multi-omics data.
Xinjun Wang, Zhe Sun, Yanfu Zhang, Zhongli Xu, Hongyi Xin

Nucleic Acids Res· June 2020

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Context-aware seeds for read mapping.
Hongyi Xin, Mingfu Shao, Carl Kingsford

Algorithms Mol Biol· May 2020

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Deep-learning-based Prediction of Late Age-Related Macular Degeneration Progression.
Qi Yan, Daniel E Weeks, Hongyi Xin, Anand Swaroop, Emily Y Chew

Nat Mach Intell· February 2020

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A Bayesian mixture model for clustering droplet-based single-cell transcriptomic data from population studies.
Zhe Sun, Li Chen, Hongyi Xin, Yale Jiang, Qianhui Huang

Nat Commun· April 2019

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