Publications by authors named "Hugh D Mitchell"

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Human Coronavirus-229E Hijacks Key Host-Cell RNA-Processing Complexes for Replication.
Snigdha Sarkar, Song Feng, Hugh D Mitchell, Madelyn R Berger, Tong Zhang

J Proteome Res· October 2025

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Metabolic profiling of two white-rot fungi during 4-hydroxybenzoate conversion reveals biotechnologically relevant biosynthetic pathways.
Lummy Maria Oliveira Monteiro, Carlos Del Cerro, Teeratas Kijpornyongpan, Allison Yaguchi, Anna Bennett, Hugh D Mitchell

Commun Biol· February 2025

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Parallel measurement of transcriptomes and proteomes from same single cells using nanodroplet splitting.
James M Fulcher, Lye Meng Markillie, Hugh D Mitchell, Sarah M Williams, Kristin M Engbrecht

Nat Commun· December 2024

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Cell-type-specific transcriptomics uncovers spatial regulatory networks in bioenergy sorghum stems.
Jie Fu, Brian McKinley, Brandon James, William Chrisler, Lye Meng Markillie, Hugh D Mitchell

Plant J· June 2024

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Molecular-Level Dysregulation of Insulin Pathways and Inflammatory Processes in Peripheral Blood Mononuclear Cells by Circadian Misalignment.
Jason E McDermott, Jon M Jacobs, Nathaniel J Merrill, Hugh D Mitchell, Osama A Arshad

J Proteome Res· May 2024

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Oligosaccharide production and signaling correlate with delayed flowering in an Arabidopsis genotype grown and selected in high [CO2].
Hannah Kinmonth-Schultz, Stephen Michael Walker, Kerem Bingol, David W Hoyt, Young-Mo Kim, Hugh D Mitchell

PLoS One· January 2024

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A crucial role for dynamic expression of components encoding the negative arm of the circadian clock.
Bin Wang, Xiaoying Zhou, Arminja N Kettenbach, Hugh D Mitchell, Lye Meng Markillie

Nat Commun· June 2023

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A crucial role for dynamic expression of components encoding the negative arm of the circadian clock.
Bin Wang, Xiaoying Zhou, Arminja N Kettenbach, Hugh D Mitchell, Lye Meng Markillie

bioRxiv· April 2023

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Uncovering Hidden Members and Functions of the Soil Microbiome Using Metaproteomics.
Joon-Yong Lee, Hugh D Mitchell, Meagan C Burnet, Ruonan Wu, Sarah C Jenson

J Proteome Res· August 2022

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Expression Patterns of Energy-Related Genes in Single Cells Uncover Key Isoforms and Enzymes That Gain Priority Under Nanoparticle-Induced Stress.
Fangjia Li, Hugh D Mitchell, Arielle C Mensch, Dehong Hu, Elizabeth D Laudadio

ACS Nano· May 2022

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Novel metabolic interactions and environmental conditions mediate the boreal peatmoss-cyanobacteria mutualism.
Alyssa A Carrell, Dušan Veličković, Travis J Lawrence, Benjamin P Bowen, Katherine B Louie, Hugh D Mitchell

ISME J· April 2022

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Distinctive carbon repression effects in the carbohydrate-selective wood decay fungus Rhodonia placenta.
Jiwei Zhang, Lye Meng Markillie, Hugh D Mitchell, Matthew J Gaffrey, Galya Orr

Fungal Genet Biol· April 2022

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Capturing an Early Gene Induction Event during Wood Decay by the Brown Rot Fungus .
Claire E Anderson, Jiwei Zhang, Lye Meng Markillie, Hugh D Mitchell, William B Chrisler

Appl Environ Microbiol· April 2022

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Unfolded Protein Response Inhibition Reduces Middle East Respiratory Syndrome Coronavirus-Induced Acute Lung Injury.
Amy C Sims, Hugh D Mitchell, Lisa E Gralinski, Jennifer E Kyle, Kristin E Burnum-Johnson

mBio· August 2021

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Hypergraph models of biological networks to identify genes critical to pathogenic viral response.
Song Feng, Emily Heath, Brett Jefferson, Cliff Joslyn, Henry Kvinge, Hugh D Mitchell

BMC Bioinformatics· May 2021

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Night shift schedule causes circadian dysregulation of DNA repair genes and elevated DNA damage in humans.
Bala S C Koritala, Kenneth I Porter, Osama A Arshad, Rajendra P Gajula, Hugh D Mitchell

J Pineal Res· April 2021

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Intracellular pathways for lignin catabolism in white-rot fungi.
Carlos Del Cerro, Erika Erickson, Tao Dong, Allison R Wong, Elizabeth K Eder, Hugh D Mitchell

Proc Natl Acad Sci U S A· March 2021

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Re-routing of Sugar Catabolism Provides a Better Insight Into Fungal Flexibility in Using Plant Biomass-Derived Monomers as Substrates.
Tania Chroumpi, Mao Peng, Lye Meng Markillie, Hugh D Mitchell, Carrie D Nicora

Front Bioeng Biotechnol· March 2021

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Metabolic Interactions between and Pseudomonas fluorescens under Controlled Iron-Limited Conditions.
Rene M Boiteau, Lye Meng Markillie, David W Hoyt, Dehong Hu, Rosalie K Chu, Hugh D Mitchell

mSystems· January 2021

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Colonies of the fungus Aspergillus niger are highly differentiated to adapt to local carbon source variation.
Paul Daly, Mao Peng, Hugh D Mitchell, Young-Mo Kim, Charles Ansong

Environ Microbiol· March 2020

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Comprehensive Proteomics Analysis of Stressed Human Islets Identifies GDF15 as a Target for Type 1 Diabetes Intervention.
Ernesto S Nakayasu, Farooq Syed, Sarah A Tersey, Marina A Gritsenko, Hugh D Mitchell

Cell Metab· February 2020

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Automated mass spectrometry imaging of over 2000 proteins from tissue sections at 100-μm spatial resolution.
Paul D Piehowski, Ying Zhu, Lisa M Bramer, Kelly G Stratton, Rui Zhao, Hugh D Mitchell

Nat Commun· January 2020

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Rosette core fungal resistance in Arabidopsis thaliana.
Yanwan Dai, Huw A Ogilvie, Yuan Liu, Michael Huang, Lye Meng Markillie, Hugh D Mitchell

Planta· December 2019

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The Role of EGFR in Influenza Pathogenicity: Multiple Network-Based Approaches to Identify a Key Regulator of Non-lethal Infections.
Hugh D Mitchell, Amie J Eisfeld, Kelly G Stratton, Natalie C Heller, Lisa M Bramer

Front Cell Dev Biol· September 2019

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Reference genes for accurate normalization of gene expression in wood-decomposing fungi.
Jiwei Zhang, Hugh D Mitchell, Lye Meng Markillie, Matthew J Gaffrey, Galya Orr

Fungal Genet Biol· February 2019

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