Publications by authors named "Ian B Dodd"

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When push comes to shove - RNA polymerase and DNA-bound protein roadblocks.
Nan Hao, Alana J Donnelly, Ian B Dodd, Keith E Shearwin

Biophys Rev· June 2023

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Analysis of Infection Time Courses Shows CII Levels Determine the Frequency of Lysogeny in Phage 186.
Nan Hao, Dylan Agnew, Sandeep Krishna, Ian B Dodd, Keith E Shearwin

Pharmaceuticals (Basel)· September 2021

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The pIT5 Plasmid Series, an Improved Toolkit for Repeated Genome Integration in .
Nan Hao, Qinqin Chen, Ian B Dodd, Keith E Shearwin

ACS Synth Biol· July 2021

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The loopometer: a quantitative in vivo assay for DNA-looping proteins.
Nan Hao, Adrienne E Sullivan, Keith E Shearwin, Ian B Dodd

Nucleic Acids Res· April 2021

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Instability of CII is needed for efficient switching between lytic and lysogenic development in bacteriophage 186.
Iain M Murchland, Alexandra Ahlgren-Berg, Julian M J Pietsch, Alejandra Isabel, Ian B Dodd

Nucleic Acids Res· December 2020

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A quantitative binding model for the Apl protein, the dual purpose recombination-directionality factor and lysis-lysogeny regulator of bacteriophage 186.
Erin E Cutts, J Barry Egan, Ian B Dodd, Keith E Shearwin

Nucleic Acids Res· September 2020

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RNA polymerase pausing at a protein roadblock can enhance transcriptional interference by promoter occlusion.
Nan Hao, Michael T Crooks, Adam C Palmer, Ian B Dodd, Keith E Shearwin

FEBS Lett· May 2019

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Positive and Negative Control of Enhancer-Promoter Interactions by Other DNA Loops Generates Specificity and Tunability.
Nan Hao, Keith E Shearwin, Ian B Dodd

Cell Rep· February 2019

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Programmable DNA looping using engineered bivalent dCas9 complexes.
Nan Hao, Keith E Shearwin, Ian B Dodd

Nat Commun· November 2017

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Efficient chromosomal-scale DNA looping in Escherichia coli using multiple DNA-looping elements.
Nan Hao, Kim Sneppen, Keith E Shearwin, Ian B Dodd

Nucleic Acids Res· May 2017

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Directing traffic on DNA-How transcription factors relieve or induce transcriptional interference.
Nan Hao, Adam C Palmer, Ian B Dodd, Keith E Shearwin

Transcription· March 2017

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The role of repressor kinetics in relief of transcriptional interference between convergent promoters.
Nan Hao, Adam C Palmer, Alexandra Ahlgren-Berg, Keith E Shearwin, Ian B Dodd

Nucleic Acids Res· August 2016

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DNA methylation in human epigenomes depends on local topology of CpG sites.
Cecilia Lövkvist, Ian B Dodd, Kim Sneppen, Jan O Haerter

Nucleic Acids Res· June 2016

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Nucleosome dynamics and maintenance of epigenetic states of CpG islands.
Kim Sneppen, Ian B Dodd

Phys Rev E· June 2016

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Cooperative stabilization of the SIR complex provides robust epigenetic memory in a model of SIR silencing in Saccharomyces cerevisiae.
Kim Sneppen, Ian B Dodd

Epigenetics· November 2015

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Bacteriophage lambda repressor mediates the formation of a complex enhancer-like structure.
Lun Cui, Iain Murchland, Ian B Dodd, Keith E Shearwin

Transcription· February 2015

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Promoter activation by CII, a potent transcriptional activator from bacteriophage 186.
Iain Murchland, Alexandra Ahlgren-Berg, David G Priest, Ian B Dodd, Keith E Shearwin

J Biol Chem· November 2014

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Quantitation of interactions between two DNA loops demonstrates loop domain insulation in E. coli cells.
David G Priest, Sandip Kumar, Yan Yan, David D Dunlap, Ian B Dodd

Proc Natl Acad Sci U S A· October 2014

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Road rules for traffic on DNA-systematic analysis of transcriptional roadblocking in vivo.
Nan Hao, Sandeep Krishna, Alexandra Ahlgren-Berg, Erin E Cutts, Keith E Shearwin, Ian B Dodd

Nucleic Acids Res· August 2014

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Collaboration between CpG sites is needed for stable somatic inheritance of DNA methylation states.
Jan O Haerter, Cecilia Lövkvist, Ian B Dodd, Kim Sneppen

Nucleic Acids Res· February 2014

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Quantitation of the DNA tethering effect in long-range DNA looping in vivo and in vitro using the Lac and λ repressors.
David G Priest, Lun Cui, Sandip Kumar, David D Dunlap, Ian B Dodd

Proc Natl Acad Sci U S A· January 2014

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One-step cloning and chromosomal integration of DNA.
François St-Pierre, Lun Cui, David G Priest, Drew Endy, Ian B Dodd

ACS Synth Biol· September 2013

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Single molecule analysis of DNA wrapping and looping by a circular 14mer wheel of the bacteriophage 186 CI repressor.
Haowei Wang, Ian B Dodd, David D Dunlap, Keith E Shearwin, Laura Finzi

Nucleic Acids Res· June 2013

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Enhancer-like long-range transcriptional activation by λ CI-mediated DNA looping.
Lun Cui, Iain Murchland, Keith E Shearwin, Ian B Dodd

Proc Natl Acad Sci U S A· February 2013

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A simple histone code opens many paths to epigenetics.
Kim Sneppen, Ian B Dodd

PLoS Comput Biol· December 2012

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