Publications by authors named "Ian Castleden"

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Subcellular Proteomics as a Unified Approach of Experimental Localizations and Computed Prediction Data for Arabidopsis and Crop Plants.
Cornelia M Hooper, Ian R Castleden, Sandra K Tanz, Sally V Grasso, A Harvey Millar

Adv Exp Med Biol· February 2022

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Identifying protein subcellular localisation in scientific literature using bidirectional deep recurrent neural network.
Rakesh David, Rhys-Joshua D Menezes, Jan De Klerk, Ian R Castleden, Cornelia M Hooper

Sci Rep· January 2021

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CropPAL for discovering divergence in protein subcellular location in crops to support strategies for molecular crop breeding.
Cornelia M Hooper, Ian R Castleden, Nader Aryamanesh, Kylie Black, Sally V Grasso

Plant J· November 2020

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The Expansion and Diversification of Pentatricopeptide Repeat RNA-Editing Factors in Plants.
Bernard Gutmann, Santana Royan, Mareike Schallenberg-Rüdinger, Henning Lenz, Ian R Castleden

Mol Plant· February 2020

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Seminal fluid compromises visual perception in honeybee queens reducing their survival during additional mating flights.
Joanito Liberti, Julia Görner, Mat Welch, Ryan Dosselli, Morten Schiøtt, Ian Castleden

Elife· September 2019

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Multiple marker abundance profiling: combining selected reaction monitoring and data-dependent acquisition for rapid estimation of organelle abundance in subcellular samples.
Cornelia M Hooper, Tim J Stevens, Anna Saukkonen, Ian R Castleden, Pragya Singh

Plant J· December 2017

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Protein Degradation Rate in Leaf Growth and Development.
Lei Li, Clark J Nelson, Josua Trösch, Ian Castleden, Shaobai Huang

Plant Cell· February 2017

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SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations.
Cornelia M Hooper, Ian R Castleden, Sandra K Tanz, Nader Aryamanesh, A Harvey Millar

Nucleic Acids Res· January 2017

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Redefining the structural motifs that determine RNA binding and RNA editing by pentatricopeptide repeat proteins in land plants.
Shifeng Cheng, Bernard Gutmann, Xiao Zhong, Yongtao Ye, Mark F Fisher, Ian Castleden

Plant J· February 2016

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Finding the Subcellular Location of Barley, Wheat, Rice and Maize Proteins: The Compendium of Crop Proteins with Annotated Locations (cropPAL).
Cornelia M Hooper, Ian R Castleden, Nader Aryamanesh, Richard P Jacoby, A Harvey Millar

Plant Cell Physiol· January 2016

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SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome.
Cornelia M Hooper, Sandra K Tanz, Ian R Castleden, Michael A Vacher, Ian D Small

Bioinformatics· December 2014

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Using the SUBcellular database for Arabidopsis proteins to localize the Deg protease family.
Sandra K Tanz, Ian Castleden, Cornelia M Hooper, Ian Small, A Harvey Millar

Front Plant Sci· August 2014

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Selected reaction monitoring to determine protein abundance in Arabidopsis using the Arabidopsis proteotypic predictor.
Nicolas L Taylor, Ricarda Fenske, Ian Castleden, Tiago Tomaz, Clark J Nelson

Plant Physiol· February 2014

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Rice DB: an Oryza Information Portal linking annotation, subcellular location, function, expression, regulation, and evolutionary information for rice and Arabidopsis.
Reena Narsai, James Devenish, Ian Castleden, Kabir Narsai, Lin Xu

Plant J· December 2013

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Fluorescent protein tagging as a tool to define the subcellular distribution of proteins in plants.
Sandra K Tanz, Ian Castleden, Ian D Small, A Harvey Millar

Front Plant Sci· June 2013

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SUBA3: a database for integrating experimentation and prediction to define the SUBcellular location of proteins in Arabidopsis.
Sandra K Tanz, Ian Castleden, Cornelia M Hooper, Michael Vacher, Ian Small

Nucleic Acids Res· January 2013

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dREL: a relational expression language for dictionary methods.
Nick Spadaccini, Ian R Castleden, Doug du Boulay, Sydney R Hall

J Chem Inf Model· August 2012

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MASCP Gator: an aggregation portal for the visualization of Arabidopsis proteomics data.
Hiren J Joshi, Matthias Hirsch-Hoffmann, Katja Baerenfaller, Wilhelm Gruissem, Sacha Baginsky, Ian Castleden

Plant Physiol· January 2011

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Common and distinct organ and stress responsive transcriptomic patterns in Oryza sativa and Arabidopsis thaliana.
Reena Narsai, Ian Castleden, James Whelan

BMC Plant Biol· November 2010

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A survey of the Arabidopsis thaliana mitochondrial phosphoproteome.
Jun Ito, Nicolas L Taylor, Ian Castleden, Wolfram Weckwerth, A Harvey Millar

Proteomics· September 2009

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Novel proteins, putative membrane transporters, and an integrated metabolic network are revealed by quantitative proteomic analysis of Arabidopsis cell culture peroxisomes.
Holger Eubel, Etienne H Meyer, Nicolas L Taylor, John D Bussell, Nicholas O'Toole, Ian Castleden

Plant Physiol· December 2008

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