Publications by authors named "Ida Shinder"

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StringTie3 Improves Total RNA-seq Assembly by Resolving Nascent and Mature Transcripts.
Ida Shinder, Geo Pertea, Richard Hu, Zoe Rudnick, Mihaela Pertea

bioRxiv· May 2025

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EASTR: Identifying and eliminating systematic alignment errors in multi-exon genes.
Ida Shinder, Richard Hu, Hyun Joo Ji, Kuan-Hao Chao, Mihaela Pertea

Nat Commun· November 2023

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CHESS 3: an improved, comprehensive catalog of human genes and transcripts based on large-scale expression data, phylogenetic analysis, and protein structure.
Ales Varabyou, Markus J Sommer, Beril Erdogdu, Ida Shinder, Ilia Minkin

Genome Biol· October 2023

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A reference-quality, fully annotated genome from a Puerto Rican individual.
Aleksey V Zimin, Alaina Shumate, Ida Shinder, Jakob Heinz, Daniela Puiu

Genetics· February 2022

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