Publications by authors named "Ignacio Ferres"

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Fast and cost-effective SARS-CoV-2 variant detection using Oxford Nanopore full-length spike gene sequencing.
Cecilia Salazar, Ignacio Ferrés, Mercedes Paz, Alicia Costábile, Gonzalo Moratorio

Microb Genom· May 2023

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Protocol for post-processing of bacterial pangenome data using Pagoo pipeline.
Ignacio Ferrés, Gregorio Iraola

STAR Protoc· December 2021

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Real-Time Genomic Surveillance for SARS-CoV-2 Variants of Concern, Uruguay.
Natalia Rego, Alicia Costábile, Mercedes Paz, Cecilia Salazar, Paula Perbolianachis

Emerg Infect Dis· November 2021

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Emergence and Spread of a B.1.1.28-Derived P.6 Lineage with Q675H and Q677H Spike Mutations in Uruguay.
Natalia Rego, Cecilia Salazar, Mercedes Paz, Alicia Costábile, Alvaro Fajardo

Viruses· September 2021

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An object-oriented framework for evolutionary pangenome analysis.
Ignacio Ferrés, Gregorio Iraola

Cell Rep Methods· September 2021

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Recurrent Dissemination of SARS-CoV-2 Through the Uruguayan-Brazilian Border.
Daiana Mir, Natalia Rego, Paola Cristina Resende, Fernando Tort, Tamara Fernández-Calero

Front Microbiol· May 2021

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Pangenome analysis reveals genetic isolation in Campylobacter hyointestinalis subspecies adapted to different mammalian hosts.
Daniela Costa, Simon Lévesque, Nitin Kumar, Pablo Fresia, Ignacio Ferrés

Sci Rep· February 2021

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simurg: simulate bacterial pangenomes in R.
Ignacio Ferrés, Pablo Fresia, Gregorio Iraola

Bioinformatics· February 2020

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Draft Genome Sequences of 40 Pathogenic Strains Isolated from Cattle in Uruguay.
Cecilia Nieves, Ignacio Ferrés, Florencia Díaz-Viraqué, Alejandro Buschiazzo, Leticia Zarantonelli

Microbiol Resour Announc· November 2019

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MLSTar: automatic multilocus sequence typing of bacterial genomes in R.
Ignacio Ferrés, Gregorio Iraola

PeerJ· June 2018

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Leptospira venezuelensis sp. nov., a new member of the intermediate group isolated from rodents, cattle and humans.
Rafael Puche, Ignacio Ferrés, Lizeth Caraballo, Yaritza Rangel, Mathieu Picardeau

Int J Syst Evol Microbiol· February 2018

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Deciphering the unexplored Leptospira diversity from soils uncovers genomic evolution to virulence.
Roman Thibeaux, Gregorio Iraola, Ignacio Ferrés, Emilie Bierque, Dominique Girault

Microb Genom· January 2018

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Genomic and clinical evidence uncovers the enterohepatic species Helicobacter valdiviensis as a potential human intestinal pathogen.
Pablo Fresia, Ronald Jara, Rafael Sierra, Ignacio Ferrés, Gonzalo Greif

Helicobacter· October 2017

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