Publications by authors named "Ines Hellmann"

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Evidence for compensatory evolution within pleiotropic regulatory elements.
Zane Kliesmete, Peter Orchard, Victor Yan Kin Lee, Johanna Geuder, Simon M Krauß, Ines Hellmann

Genome Res· October 2024

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Generation and characterization of inducible KRAB-dCas9 iPSCs from primates for cross-species CRISPRi.
Fiona C Edenhofer, Anita Térmeg, Mari Ohnuki, Jessica Jocher, Zane Kliesmete, Ines Hellmann

iScience· June 2024

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The effect of background noise and its removal on the analysis of single-cell expression data.
Philipp Janssen, Zane Kliesmete, Beate Vieth, Xian Adiconis, Sean Simmons, Ines Hellmann

Genome Biol· June 2023

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Regulatory and coding sequences of TRNP1 co-evolve with brain size and cortical folding in mammals.
Zane Kliesmete, Lucas Esteban Wange, Beate Vieth, Miriam Esgleas, Jessica Radmer, Ines Hellmann

Elife· March 2023

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Adverse stem cell clones within a single patient's tumor predict clinical outcome in AML patients.
Christina Zeller, Daniel Richter, Vindi Jurinovic, Ilse A Valtierra-Gutiérrez, Ashok Kumar Jayavelu, Ines Hellmann

J Hematol Oncol· March 2022

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Prime-seq, efficient and powerful bulk RNA sequencing.
Aleksandar Janjic, Lucas E Wange, Johannes W Bagnoli, Johanna Geuder, Phong Nguyen, Ines Hellmann

Genome Biol· March 2022

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The pluripotent stem cell-specific transcript ESRG is dispensable for human pluripotency.
Kazutoshi Takahashi, Michiko Nakamura, Chikako Okubo, Zane Kliesmete, Mari Ohnuki, Ines Hellmann

PLoS Genet· May 2021

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TAMEP are brain tumor parenchymal cells controlling neoplastic angiogenesis and progression.
Roland E Kälin, Linzhi Cai, Yuping Li, Dongxu Zhao, Huabin Zhang, Ines Hellmann

Cell Syst· March 2021

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A systematic evaluation of single cell RNA-seq analysis pipelines.
Beate Vieth, Swati Parekh, Christoph Ziegenhain, Wolfgang Enard, Ines Hellmann

Nat Commun· October 2019

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Quantitative single-cell transcriptomics.
Christoph Ziegenhain, Beate Vieth, Swati Parekh, Ines Hellmann, Wolfgang Enard

Brief Funct Genomics· July 2018

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Sensitive and powerful single-cell RNA sequencing using mcSCRB-seq.
Johannes W Bagnoli, Christoph Ziegenhain, Aleksandar Janjic, Lucas E Wange, Beate Vieth, Ines Hellmann

Nat Commun· July 2018

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zUMIs - A fast and flexible pipeline to process RNA sequencing data with UMIs.
Swati Parekh, Christoph Ziegenhain, Beate Vieth, Wolfgang Enard, Ines Hellmann

Gigascience· June 2018

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Evolution of Cytogenetically Normal Acute Myeloid Leukemia During Therapy and Relapse: An Exome Sequencing Study of 50 Patients.
Philipp A Greif, Luise Hartmann, Sebastian Vosberg, Sophie M Stief, Raphael Mattes, Ines Hellmann

Clin Cancer Res· April 2018

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powsimR: power analysis for bulk and single cell RNA-seq experiments.
Beate Vieth, Christoph Ziegenhain, Swati Parekh, Wolfgang Enard, Ines Hellmann

Bioinformatics· November 2017

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L1 retrotransposition is activated by Ten-eleven-translocation protein 1 and repressed by methyl-CpG binding proteins.
Peng Zhang, Anne K Ludwig, Florian D Hastert, Cathia Rausch, Anne Lehmkuhl, Ines Hellmann

Nucleus· September 2017

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Initial high-resolution microscopic mapping of active and inactive regulatory sequences proves non-random 3D arrangements in chromatin domain clusters.
Marion Cremer, Volker J Schmid, Felix Kraus, Yolanda Markaki, Ines Hellmann

Epigenetics Chromatin· August 2017

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Binding of MBD proteins to DNA blocks Tet1 function thereby modulating transcriptional noise.
Anne K Ludwig, Peng Zhang, Florian D Hastert, Stephanie Meyer, Cathia Rausch, Ines Hellmann

Nucleic Acids Res· March 2017

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Comparative Analysis of Single-Cell RNA Sequencing Methods.
Christoph Ziegenhain, Beate Vieth, Swati Parekh, Björn Reinius, Amy Guillaumet-Adkins, Ines Hellmann

Mol Cell· February 2017

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SweepFinder2: increased sensitivity, robustness and flexibility.
Michael DeGiorgio, Christian D Huber, Melissa J Hubisz, Ines Hellmann, Rasmus Nielsen

Bioinformatics· June 2016

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The impact of amplification on differential expression analyses by RNA-seq.
Swati Parekh, Christoph Ziegenhain, Beate Vieth, Wolfgang Enard, Ines Hellmann

Sci Rep· May 2016

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Detecting recent selective sweeps while controlling for mutation rate and background selection.
Christian D Huber, Michael DeGiorgio, Ines Hellmann, Rasmus Nielsen

Mol Ecol· January 2016

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Keeping it local: evidence for positive selection in Swedish Arabidopsis thaliana.
Christian D Huber, Magnus Nordborg, Joachim Hermisson, Ines Hellmann

Mol Biol Evol· November 2014

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Massive genomic variation and strong selection in Arabidopsis thaliana lines from Sweden.
Quan Long, Fernando A Rabanal, Dazhe Meng, Christian D Huber, Ashley Farlow, Ines Hellmann

Nat Genet· August 2013

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The bonobo genome compared with the chimpanzee and human genomes.
Kay Prüfer, Kasper Munch, Ines Hellmann, Keiko Akagi, Jason R Miller

Nature· June 2012

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