Publications by authors named "Isabelle Domaizon"

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Comparison of Metabarcoding and Shotgun Sequencing Confirms the Relevance of Chloroplastic rRNA Genes to Assess Community Structure of Lake Phytoplankton.
Clarisse Lemonnier, Benjamin Alric, Isabelle Domaizon, Frédéric Rimet

Mol Ecol Resour· January 2026

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Omics to Study and Manage Aquatic Environments: A Snapshot From the AquaEcOmics Meeting (Evian-les-Bains, 2025).
Frédéric Rimet, Clarisse Lemonnier, Benjamin Alric, Pedro Beja, Lucie Bittner, Isabelle Domaizon

Mol Ecol· September 2025

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The effect of seismic air gun shots on physiology and behaviour of fish lake communities.
Emilie Réalis-Doyelle, Chloé Goulon, Franck Cattanéo, Lucia Di Iorio, Isabelle Domaizon

Sci Rep· April 2025

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Assessing the relevance of DNA metabarcoding compared to morphological identification for lake phytoplankton monitoring.
Maria Mercedes Nicolosi Gelis, Alexis Canino, Agnès Bouchez, Isabelle Domaizon, Christophe Laplace-Treyture

Sci Total Environ· March 2024

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Physico-chemical and high frequency monitoring dataset from mesocosm experiments simulating extreme climate events in lakes.
Viet Tran-Khac, Philippe Quetin, Laurent Espinat, Laura Crépin, Charlotte Cousin, Isabelle Domaizon

Data Brief· August 2023

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DNA sequence and taxonomic gap analyses to quantify the coverage of aquatic cyanobacteria and eukaryotic microalgae in reference databases: Results of a survey in the Alpine region.
Nico Salmaso, Valentin Vasselon, Frédéric Rimet, Marine Vautier, Tina Elersek, Isabelle Domaizon

Sci Total Environ· August 2022

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Spatio-temporal variability of eDNA signal and its implication for fish monitoring in lakes.
Alix Hervé, Isabelle Domaizon, Jean-Marc Baudoin, Tony Dejean, Pierre Gibert

PLoS One· August 2022

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Fish eDNA metabarcoding from aquatic biofilm samples: Methodological aspects.
Sinziana F Rivera, Frédéric Rimet, Valentin Vasselon, Marine Vautier, Isabelle Domaizon

Mol Ecol Resour· May 2022

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Environmental paleomicrobiology: using DNA preserved in aquatic sediments to its full potential.
Eric Capo, Marie-Eve Monchamp, Marco J L Coolen, Isabelle Domaizon, Linda Armbrecht

Environ Microbiol· May 2022

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Paleoreconstructions of ciliate communities reveal long-term ecological changes in temperate lakes.
Cécilia Barouillet, Valentin Vasselon, François Keck, Laurent Millet, David Etienne, Isabelle Domaizon

Sci Rep· May 2022

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Seasonal Dynamics of Abundance, Structure, and Diversity of Methanogens and Methanotrophs in Lake Sediments.
Emilie Lyautey, Elodie Billard, Nathalie Tissot, Stéphan Jacquet, Isabelle Domaizon

Microb Ecol· October 2021

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Physico-chemical dataset from an mesocosm experiment simulating extreme climate events in Lake Geneva (MESOLAC).
Viet Tran-Khac, Pascal Perney, Laura Crépin, Philippe Quetin, Isabelle Domaizon

Data Brief· June 2021

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Landscape Setting Drives the Microbial Eukaryotic Community Structure in Four Swedish Mountain Lakes over the Holocene.
Eric Capo, Sofia Ninnes, Isabelle Domaizon, Stefan Bertilsson, Christian Bigler

Microorganisms· February 2021

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Protist taxonomic and functional diversity in soil, freshwater and marine ecosystems.
David Singer, Christophe V W Seppey, Guillaume Lentendu, Micah Dunthorn, David Bass, Isabelle Domaizon

Environ Int· January 2021

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In situ pelagic dataset from continuous monitoring: A mesocosm experiment in Lake Geneva (MESOLAC).
Viet Tran-Khac, Philippe Quetin, Isabelle Domaizon, Stéphan Jacquet, Laurent Espinat

Data Brief· October 2020

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Assessing the response of micro-eukaryotic diversity to the Great Acceleration using lake sedimentary DNA.
François Keck, Laurent Millet, Didier Debroas, David Etienne, Didier Galop, Isabelle Domaizon

Nat Commun· July 2020

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Global distribution of Trebouxiophyceae diversity explored by high-throughput sequencing and phylogenetic approaches.
Sebastian Metz, David Singer, Isabelle Domaizon, Fernando Unrein, Enrique Lara

Environ Microbiol· October 2019

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Diversity, spatial distribution and activity of fungi in freshwater ecosystems.
Cécile Lepère, Isabelle Domaizon, Jean-Francois Humbert, Ludwig Jardillier, Mylène Hugoni

PeerJ· February 2019

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Development and implementation of eco-genomic tools for aquatic ecosystem biomonitoring: the SYNAQUA French-Swiss program.
Estelle Lefrançois, Laure Apothéloz-Perret-Gentil, Philippe Blancher, Samuel Botreau, Cécile Chardon, Isabelle Domaizon

Environ Sci Pollut Res Int· December 2018

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The future of biotic indices in the ecogenomic era: Integrating (e)DNA metabarcoding in biological assessment of aquatic ecosystems.
Jan Pawlowski, Mary Kelly-Quinn, Florian Altermatt, Laure Apothéloz-Perret-Gentil, Pedro Beja, Isabelle Domaizon

Sci Total Environ· October 2018

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Homogenization of lake cyanobacterial communities over a century of climate change and eutrophication.
Marie-Eve Monchamp, Piet Spaak, Isabelle Domaizon, Nathalie Dubois, Damien Bouffard

Nat Ecol Evol· February 2018

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Tracking a century of changes in microbial eukaryotic diversity in lakes driven by nutrient enrichment and climate warming.
Eric Capo, Didier Debroas, Fabien Arnaud, Marie-Elodie Perga, Cécile Chardon, Isabelle Domaizon

Environ Microbiol· July 2017

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Overview of freshwater microbial eukaryotes diversity: a first analysis of publicly available metabarcoding data.
Didier Debroas, Isabelle Domaizon, Jean-Francois Humbert, Ludwig Jardillier, Cécile Lepère

FEMS Microbiol Ecol· April 2017

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Long-term dynamics in microbial eukaryotes communities: a palaeolimnological view based on sedimentary DNA.
Eric Capo, Didier Debroas, Fabien Arnaud, Typhaine Guillemot, Vincent Bichet, Isabelle Domaizon

Mol Ecol· December 2016

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Trophic relationships between metazooplankton communities and their plankton food sources in the Iles Eparses (Western Indian Ocean).
Christine Dupuy, Marc Pagano, Patrice Got, Isabelle Domaizon, Alexis Chappuis

Mar Environ Res· May 2016

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