Publications by authors named "Isabelle Sirois"

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Hypoxia is linked to acquired resistance to immune checkpoint inhibitors in lung cancer.
Camila Robles-Oteíza, Katherine Hastings, Jungmin Choi, Isabelle Sirois, Arvind Ravi

J Exp Med· January 2025

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Machine learning-enhanced immunopeptidomics applied to T-cell epitope discovery for COVID-19 vaccines.
Kevin A Kovalchik, David J Hamelin, Peter Kubiniok, Benoîte Bourdin, Fatima Mostefai, Isabelle Sirois

Nat Commun· November 2024

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Scaling up robust immunopeptidomics technologies for a global T cell surveillance digital network.
Saketh Kapoor, Loïze Maréchal, Isabelle Sirois, Étienne Caron

J Exp Med· January 2024

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Unlocking the potential of microfluidics in mass spectrometry-based immunopeptidomics for tumor antigen discovery.
Charlotte Stutzmann, Jiaxi Peng, Zhaoguan Wu, Christopher Savoie, Isabelle Sirois

Cell Rep Methods· June 2023

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Cellular Senescence Is Immunogenic and Promotes Antitumor Immunity.
Ines Marin, Olga Boix, Andrea Garcia-Garijo, Isabelle Sirois, Adrià Caballe

Cancer Discov· February 2023

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HSP90 inhibitors induce GPNMB cell-surface expression by modulating lysosomal positioning and sensitize breast cancer cells to glembatumumab vedotin.
Marco Biondini, Alex Kiepas, Leeanna El-Houjeiri, Matthew G Annis, Brian E Hsu, Isabelle Sirois

Oncogene· March 2022

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The mutational landscape of SARS-CoV-2 variants diversifies T cell targets in an HLA-supertype-dependent manner.
David J Hamelin, Dominique Fournelle, Jean-Christophe Grenier, Jana Schockaert, Kevin A Kovalchik, Isabelle Sirois

Cell Syst· February 2022

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Understanding the constitutive presentation of MHC class I immunopeptidomes in primary tissues.
Peter Kubiniok, Ana Marcu, Leon Bichmann, Leon Kuchenbecker, Heiko Schuster, Isabelle Sirois

iScience· February 2022

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MhcVizPipe: A Quality Control Software for Rapid Assessment of Small- to Large-Scale Immunopeptidome Datasets.
Kevin A Kovalchik, Qing Ma, Laura Wessling, Frederic Saab, Jérôme D Duquette, Isabelle Sirois

Mol Cell Proteomics· January 2022

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RHybridFinder: An R package to process immunopeptidomic data for putative hybrid peptide discovery.
Frederic Saab, David J Hamelin, Qing Ma, Kevin A Kovalchik, Isabelle Sirois

STAR Protoc· December 2021

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Immunopeptidomics: Isolation of Mouse and Human MHC Class I- and II-Associated Peptides for Mass Spectrometry Analysis.
Isabelle Sirois, Maxim Isabelle, Jérôme D Duquette, Frederic Saab, Etienne Caron

J Vis Exp· October 2021

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The Human Immunopeptidome Project: A Roadmap to Predict and Treat Immune Diseases.
Juan Antonio Vizcaíno, Peter Kubiniok, Kevin A Kovalchik, Qing Ma, Jérôme D Duquette, Isabelle Sirois

Mol Cell Proteomics· January 2020

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A Unique Morphological Phenotype in Chemoresistant Triple-Negative Breast Cancer Reveals Metabolic Reprogramming and PLIN4 Expression as a Molecular Vulnerability.
Isabelle Sirois, Adriana Aguilar-Mahecha, Josiane Lafleur, Emma Fowler, Viet Vu

Mol Cancer Res· December 2019

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The Estrogen Receptor Cofactor SPEN Functions as a Tumor Suppressor and Candidate Biomarker of Drug Responsiveness in Hormone-Dependent Breast Cancers.
Stéphanie Légaré, Luca Cavallone, Aline Mamo, Catherine Chabot, Isabelle Sirois

Cancer Res· October 2015

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A comprehensive characterization of membrane vesicles released by autophagic human endothelial cells.
Nicolas Pallet, Isabelle Sirois, Christina Bell, Laïla-Aïcha Hanafi, Katia Hamelin

Proteomics· April 2013

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MFG-E8 released by apoptotic endothelial cells triggers anti-inflammatory macrophage reprogramming.
Marie-Joëlle Brissette, Stéphanie Lepage, Anne-Sophie Lamonde, Isabelle Sirois, Jessika Groleau

PLoS One· September 2012

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Caspase activation regulates the extracellular export of autophagic vacuoles.
Isabelle Sirois, Jessika Groleau, Nicolas Pallet, Nathalie Brassard, Katia Hamelin

Autophagy· June 2012

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Epidermal growth factor and perlecan fragments produced by apoptotic endothelial cells co-ordinately activate ERK1/2-dependent antiapoptotic pathways in mesenchymal stem cells.
Mathilde Soulez, Isabelle Sirois, Nathalie Brassard, Marc-André Raymond, Frédéric Nicodème

Stem Cells· April 2010

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Caspase-3 activation triggers extracellular cathepsin L release and endorepellin proteolysis.
Jean-François Cailhier, Isabelle Sirois, Patrick Laplante, Stéphanie Lepage, Marc-André Raymond

J Biol Chem· October 2008

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Eating well with Canada's Food Guide (2007): development of the food intake pattern.
Stefa W Katamay, Krista A Esslinger, Michel Vigneault, Janice L Johnston, Beth A Junkins, Isabelle V Sirois

Nutr Rev· April 2007

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Biomechanical bone strength and bone mass in young male and female rats fed a fish oil diet.
Isabelle Sirois, Angela M Cheung, Wendy E Ward

Prostaglandins Leukot Essent Fatty Acids· June 2003

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Soluble Fas: a novel predictor of atherosclerosis in dialysis patients.
Stéphan Troyanov, Marie-Josée Hébert, Mélanie Masse, Normand Vigneault, Isabelle Sirois

Am J Kidney Dis· May 2003

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Soluble Fas is a marker of peripheral arterial occlusive disease in haemodialysis patients.
Mélanie Masse, Marie-Josée Hébert, Stéphan Troyanov, Normand Vigneault, Isabelle Sirois

Nephrol Dial Transplant· March 2002

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