Publications by authors named "Ivan Rossi"

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Beyond Cox models: Assessing the performance of machine-learning methods in non-proportional hazards and non-linear survival analysis.
Giovanni Birolo, Ivan Rossi, Flavio Sartori, Cesare Rollo, Piero Fariselli

Comput Biol Med· November 2025

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Mass balance approximation of unfolding boosts potential-based protein stability predictions.
Ivan Rossi, Guido Barducci, Tiziana Sanavia, Paola Turina, Emidio Capriotti

Protein Sci· May 2025

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SYNDSURV: A simple framework for survival analysis with data distributed across multiple institutions.
Cesare Rollo, Corrado Pancotti, Giovanni Birolo, Ivan Rossi, Tiziana Sanavia

Comput Biol Med· April 2024

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Influence of Model Structures on Predictors of Protein Stability Changes from Single-Point Mutations.
Cesare Rollo, Corrado Pancotti, Giovanni Birolo, Ivan Rossi, Tiziana Sanavia

Genes (Basel)· December 2023

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Fido-SNP: the first webserver for scoring the impact of single nucleotide variants in the dog genome.
Emidio Capriotti, Ludovica Montanucci, Giuseppe Profiti, Ivan Rossi, Diana Giannuzzi

Nucleic Acids Res· July 2019

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How to inherit statistically validated annotation within BAR+ protein clusters.
Damiano Piovesan, Pier Luigi Martelli, Piero Fariselli, Giuseppe Profiti, Andrea Zauli, Ivan Rossi

BMC Bioinformatics· July 2013

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BAR-PLUS: the Bologna Annotation Resource Plus for functional and structural annotation of protein sequences.
Damiano Piovesan, Pier Luigi Martelli, Piero Fariselli, Andrea Zauli, Ivan Rossi

Nucleic Acids Res· July 2011

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ASPicDB: a database of annotated transcript and protein variants generated by alternative splicing.
Pier L Martelli, Mattia D'Antonio, Paola Bonizzoni, Tiziana Castrignanò, Anna M D'Erchia, Ivan Rossi

Nucleic Acids Res· January 2011

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A three-state prediction of single point mutations on protein stability changes.
Emidio Capriotti, Piero Fariselli, Ivan Rossi, Rita Casadio

BMC Bioinformatics· March 2008

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The WWWH of remote homolog detection: the state of the art.
Piero Fariselli, Ivan Rossi, Emidio Capriotti, Rita Casadio

Brief Bioinform· March 2007

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The implications of alternative splicing in the ENCODE protein complement.
Michael L Tress, Pier Luigi Martelli, Adam Frankish, Gabrielle A Reeves, Jan Jaap Wesselink, Ivan Rossi

Proc Natl Acad Sci U S A· March 2007

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PONGO: a web server for multiple predictions of all-alpha transmembrane proteins.
Mauro Amico, Michele Finelli, Ivan Rossi, Andrea Zauli, Arne Elofsson

Nucleic Acids Res· July 2006

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TRAMPLE: the transmembrane protein labelling environment.
Piero Fariselli, Michele Finelli, Ivan Rossi, Mauro Amico, Andrea Zauli

Nucleic Acids Res· July 2005

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Intraresidue distribution of energy in proteins.
Bruno Trebbi, Marianna Fanti, Ivan Rossi, Francesco Zerbetto

J Phys Chem B· March 2005

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A Shannon entropy-based filter detects high- quality profile-profile alignments in searches for remote homologues.
Emidio Capriotti, Piero Fariselli, Ivan Rossi, Rita Casadio

Proteins· February 2004

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MaxSubSeq: an algorithm for segment-length optimization. The case study of the transmembrane spanning segments.
Piero Fariselli, Michele Finelli, Davide Marchignoli, Pier Luigi Martelli, Ivan Rossi

Bioinformatics· March 2003

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Rates and Equilibria of the Michael-Type Addition of Benzenethiol to 2-Cyclopenten-1-ones.
Valeria van Axel Castelli, Fernando Bernardi, Antonella Dalla Cort, Luigi Mandolini, Ivan Rossi

J Org Chem· October 1999

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