Publications by authors named "Jacob Berkowitz"

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Cell-type specific single-cell signatures reveal nephrotoxic drug effects.
Aditi Kuchi, Jose Miguel Acitores Cortina, Hongyu Liu, Yasaman Fatapour, Jacob Berkowitz

Comput Struct Biotechnol J· December 2025

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Foundation Models for Translational Cancer Biology.
Kevin K Tsang, Sophia Kivelson, Jose M Acitores Cortina, Aditi Kuchi, Jacob S Berkowitz

Annu Rev Biomed Data Sci· August 2025

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Large Language Model Analysis of Reporting Quality of Randomized Clinical Trial Articles: A Systematic Review.
Apoorva Srinivasan, Jacob Berkowitz, Nadine A Friedrich, Sophia Kivelson, Nicholas P Tatonetti

JAMA Netw Open· August 2025

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OnSIDES database: Extracting adverse drug events from drug labels using natural language processing models.
Yutaro Tanaka, Hsin Yi Chen, Pietro Belloni, Undina Gisladottir, Jenna Kefeli, Jacob Berkowitz

Med· July 2025

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Biomedical text normalization through generative modeling.
Jacob S Berkowitz, Apoorva Srinivasan, Jose Miguel Acitores Cortina, Yasaman Fatapour, Nicholas P Tatonetti

J Biomed Inform· July 2025

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Cell-Type Specific Single-Cell Signatures Reveal Nephrotoxic Drug Affects.
Aditi Kuchi, Jose Miguel Acitores Cortina, Hongyu Liu, Yasaman Fatapour, Jacob Berkowitz

bioRxiv· June 2025

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Unique and shared transcriptomic signatures underlying localized scleroderma pathogenesis identified using interpretable machine learning.
Aaron Bi Rosen, Anwesha Sanyal, Theresa Hutchins, Giffin Werner, Jacob S Berkowitz

JCI Insight· April 2025

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Biomedical Text Normalization through Generative Modeling.
Jacob S Berkowitz, Apoorva Srinivasan, Jose Miguel Acitores Cortina, Yasaman Fatapour, Nicholas P Tatonetti

medRxiv· March 2025

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Biases in Race and Ethnicity Introduced by Filtering Electronic Health Records for "Complete Data": Observational Clinical Data Analysis.
Jose Miguel Acitores Cortina, Yasaman Fatapour, Kathleen LaRow Brown, Undina Gisladottir, Michael Zietz, Jacob S Berkowitz

JMIR Med Inform· March 2025

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Probing Large Language Model Hidden States for Adverse Drug Reaction Knowledge.
Jacob Berkowitz, Davy Weissenbacher, Apoorva Srinivasan, Nadine A Friedrich, Jose Miguel Acitores Cortina

medRxiv· February 2025

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Military activity and wetland-dependent wildlife: A warfare ecology perspective.
Evan S Grimes, Marissa L Kneer, Jacob F Berkowitz

Integr Environ Assess Manag· November 2024

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The impact of hematology electronic consultations on the management of iron deficiency.
Hannah L King, Genevieve B Benedetti, Stefan Barisic, Virginia Tan, Marie E Piatski, Jacob M Berkowitz

Eur J Haematol· November 2024

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Generalizable and automated classification of TNM stage from pathology reports with external validation.
Jenna Kefeli, Jacob Berkowitz, Jose M Acitores Cortina, Kevin K Tsang, Nicholas P Tatonetti

Nat Commun· October 2024

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Cell Type-Specific Biomarkers of Systemic Sclerosis Disease Severity Capture Cell-Intrinsic and Cell-Extrinsic Circuits.
Jacob S Berkowitz, Tracy Tabib, Hanxi Xiao, Gabrielle M Sadej, Dinesh Khanna

Arthritis Rheumatol· October 2023

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A Rare Case of Therapy-Related B-cell Acute Lymphoblastic Leukemia Arising From Acute Myeloid Leukemia.
Vishvaas Ravikumar, Jacob Berkowitz, Omar Khan, Diana P Garcia, Ramalingam Ratnasabapathy

Cureus· September 2023

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Indicator of Reduction in Soil (IRIS) devices: A review.
Yadav Sapkota, Chelsea Duball, Karen Vaughan, Martin C Rabenhorst, Jacob F Berkowitz

Sci Total Environ· December 2022

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Nitrogen and phosphorus removal using tile-treatment wetlands: A 12-year study from the midwestern United States.
A Maria Lemke, Krista G Kirkham, Michael P Wallace, Christine M VanZomeren, Jacob F Berkowitz

J Environ Qual· September 2022

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How patients experience endocrine therapy for breast cancer: an online survey of side effects, adherence, and medical team support.
Maurice J Berkowitz, Carlie K Thompson, Laura T Zibecchi, Minna K Lee, Elani Streja, Jacob S Berkowitz

J Cancer Surviv· February 2021

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Quantifying Wildlife and Navigation Benefits of a Dredging Beneficial-Use Project in the Lower Atchafalaya River: A Demonstration of Engineering with Nature®.
Christy M Foran, Kelly A Burks-Copes, Jacob Berkowitz, Jeffrey Corbino, Burton C Suedel

Integr Environ Assess Manag· November 2018

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Investigation of biogeochemical functional proxies in headwater streams across a range of channel and catchment alterations.
Jacob F Berkowitz, Elizabeth A Summers, Chris V Noble, John R White, Ronald D DeLaune

Environ Manage· March 2014

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Aluminum polymers formed following alum treatment of lake water.
Michael A Anderson, Jacob Berkowitz

Chemosphere· November 2010

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Influence of aging on phosphorus sorption to alum floc in lake water.
Jacob Berkowitz, Michael A Anderson, Christopher Amrhein

Water Res· March 2006

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Laboratory investigation of aluminum solubility and solid-phase properties following alum treatment of lake waters.
Jacob Berkowitz, Michael A Anderson, Robert C Graham

Water Res· October 2005

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Determination of the solids retainment effectiveness of disposable swim diapers.
Richard P Maas, Steven C Patch, Jacob F Berkowitz, Holly D Johnson

J Environ Health· June 2004

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