Publications by authors named "Jacob I Marsh"

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HaploVar: An R package for defining local haplotype variants for trait association and trait prediction analyses.
Tessa R MacNish, Hawlader A Al-Mamun, Thomas Bergmann, Mitchell S Bestry, Jacob I Marsh

Bioinformatics· December 2025

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Effects of rescaling forward-in-time population genetic simulations.
Jacob I Marsh, Sachin Kaushik, Parul Johri

Genetics· December 2025

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Local Haplotyping Analysis for Flowering Time in Soybean Using Crosshap.
Shameela Mohamedikbal, Shriprabha R Upadhyaya, Mitchell Bestry, Jacob I Marsh, David Edwards

Methods Mol Biol· October 2025

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Exploring genomic feature selection: A comparative analysis of GWAS and machine learning algorithms in a large-scale soybean dataset.
Hawlader A Al-Mamun, Monica F Danilevicz, Jacob I Marsh, Cedric Gondro, David Edwards

Plant Genome· March 2025

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Local haplotyping reveals insights into the genetic control of flowering time variation in wild and domesticated soybean.
Shameela Mohamedikbal, Hawlader A Al-Mamun, Jacob I Marsh, Shriprabha Upadhyaya, Monica F Danilevicz

Plant Genome· December 2024

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Author Correction: Adaptive gene loss in the common bean pan-genome during range expansion and domestication.
Gaia Cortinovis, Leonardo Vincenzi, Robyn Anderson, Giovanni Marturano, Jacob Ian Marsh

Nat Commun· October 2024

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Adaptive gene loss in the common bean pan-genome during range expansion and domestication.
Gaia Cortinovis, Leonardo Vincenzi, Robyn Anderson, Giovanni Marturano, Jacob Ian Marsh

Nat Commun· August 2024

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Biases in ARG-Based Inference of Historical Population Size in Populations Experiencing Selection.
Jacob I Marsh, Parul Johri

Mol Biol Evol· July 2024

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crosshap: R package for local haplotype visualization for trait association analysis.
Jacob I Marsh, Jakob Petereit, Brady A Johnston, Philipp E Bayer, Cassandria G Tay Fernandez

Bioinformatics· August 2023

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Legume-wide comparative analysis of pod shatter locus PDH1 reveals phaseoloid specificity, high cowpea expression, and stress responsive genomic context.
Jacob I Marsh, Benjamin J Nestor, Jakob Petereit, Cassandria G Tay Fernandez, Philipp E Bayer

Plant J· July 2023

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Isolation and Sequencing of Chromosome Arm 7RS of Rye, .
Jakob Petereit, Cassandria Tay Fernandez, Jacob I Marsh, Philipp E Bayer, William J W Thomas

Int J Mol Sci· September 2022

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An SGSGeneloss-Based Method for Constructing a Gene Presence-Absence Table Using Mosdepth.
Cassandria G Tay Fernandez, Jacob I Marsh, Benjamin J Nestor, Mitchell Gill, Agnieszka A Golicz

Methods Mol Biol· July 2022

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Haplotype mapping uncovers unexplored variation in wild and domesticated soybean at the major protein locus cqProt-003.
Jacob I Marsh, Haifei Hu, Jakob Petereit, Philipp E Bayer, Babu Valliyodan

Theor Appl Genet· April 2022

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Genetic and Genomic Resources for Soybean Breeding Research.
Jakob Petereit, Jacob I Marsh, Philipp E Bayer, Monica F Danilevicz, William J W Thomas

Plants (Basel)· April 2022

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Sequencing the USDA core soybean collection reveals gene loss during domestication and breeding.
Philipp E Bayer, Babu Valliyodan, Haifei Hu, Jacob I Marsh, Yuxuan Yuan

Plant Genome· March 2022

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Expanding Gene-Editing Potential in Crop Improvement with Pangenomes.
Cassandria G Tay Fernandez, Benjamin J Nestor, Monica F Danilevicz, Jacob I Marsh, Jakob Petereit

Int J Mol Sci· February 2022

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Crop breeding for a changing climate: integrating phenomics and genomics with bioinformatics.
Jacob I Marsh, Haifei Hu, Mitchell Gill, Jacqueline Batley, David Edwards

Theor Appl Genet· June 2021

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High-Throughput Genotyping Technologies in Plant Taxonomy.
Monica F Danilevicz, Cassandria G Tay Fernandez, Jacob I Marsh, Philipp E Bayer, David Edwards

Methods Mol Biol· March 2021

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Plant pangenomics: approaches, applications and advancements.
Monica Furaste Danilevicz, Cassandria Geraldine Tay Fernandez, Jacob Ian Marsh, Philipp Emanuel Bayer, David Edwards

Curr Opin Plant Biol· April 2020

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