Publications by authors named "Jacob Stanley"

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Radical cascade cyclization of amino acid-tethered 1,6-enynones with sulfonyl hydrazides for N-terminal modification: synthesis of functionalized succinimide derivatives.
Mathiyazhagan Sivanantham, Jenis Jacob Stanley, Kesavan Muthu, Sivan Velmathi, Gopal Chandru Senadi

RSC Adv· August 2025

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LIET model: capturing the kinetics of RNA polymerase from loading to termination.
Jacob T Stanley, Georgia E F Barone, Hope A Townsend, Rutendo F Sigauke, Mary A Allen

Nucleic Acids Res· April 2025

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Atlas of nascent RNA transcripts reveals tissue-specific enhancer to gene linkages.
Rutendo F Sigauke, Lynn Sanford, Zachary L Maas, Taylor Jones, Jacob T Stanley

BMC Genomics· April 2025

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Neural Representations of Emotions in Visual, Auditory, and Modality-Independent Regions Reflect Idiosyncratic Conceptual Knowledge.
Chuanji Gao, Sewon Oh, Xuan Yang, Jacob M Stanley, Svetlana V Shinkareva

Hum Brain Mapp· October 2024

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Development of High Surface Area Organosilicate Nanoparticulate Thin Films for Use in Sensing Hydrophobic Compounds in Sediment and Water.
Sangho Bok, Venumadhav R Korampally, Jacob K Stanley, Keshab Gangopadhyay, Shubhra Gangopadhyay

Biosensors (Basel)· June 2024

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Atlas of nascent RNA transcripts reveals enhancer to gene linkages.
Rutendo F Sigauke, Lynn Sanford, Zachary L Maas, Taylor Jones, Jacob T Stanley

bioRxiv· December 2023

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Aging disrupts gene expression timing during muscle regeneration.
Jesse V Kurland, Alicia A Cutler, Jacob T Stanley, Nicole Dalla Betta, Ashleigh Van Deusen

Stem Cell Reports· June 2023

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Determination of steady-state transcriptome modifications associated with repeated homotypic stress in the rat rostral posterior hypothalamic region.
Serge Campeau, Connor McNulty, Jacob T Stanley, Anthony N Gerber, Sarah K Sasse

Front Neurosci· June 2023

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Protocol variations in run-on transcription dataset preparation produce detectable signatures in sequencing libraries.
Samuel Hunter, Rutendo F Sigauke, Jacob T Stanley, Mary A Allen, Robin D Dowell

BMC Genomics· March 2022

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Inter-species lateral gene transfer focused on the Chlamydia plasticity zone identifies loci associated with immediate cytotoxicity and inclusion stability.
Zoe E Dimond, Robert J Suchland, Srishti Baid, Scott D LaBrie, Katelyn R Soules, Jacob Stanley

Mol Microbiol· December 2021

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Transcription factor enrichment analysis (TFEA) quantifies the activity of multiple transcription factors from a single experiment.
Jonathan D Rubin, Jacob T Stanley, Rutendo F Sigauke, Cecilia B Levandowski, Zachary L Maas

Commun Biol· June 2021

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Two-stage ML Classifier for Identifying Host Protein Targets of the Dengue Protease.
Jacob T Stanley, Alison R Gilchrist, Alex C Stabell, Mary A Allen, Sara L Sawyer

Pac Symp Biocomput· March 2021

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Corbicula fluminea rapidly accumulate pharmaceuticals from an effluent dependent urban stream.
S Rebekah Burket, Mendie White, Alejandro J Ramirez, Jacob K Stanley, Kenneth E Banks

Chemosphere· June 2019

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Subchronic, chronic, lethal and sublethal toxicity of insensitive munitions mixture formulations relative to individual constituents in Hyalella azteca.
Guilherme R Lotufo, Jacob K Stanley, Pornsawan Chappell, Nicolas L Melby, Mitchell S Wilbanks

Chemosphere· November 2018

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Transcriptomics provides mechanistic indicators of mixture toxicology for IMX-101 and IMX-104 formulations in fathead minnows (Pimephales promelas).
Kurt A Gust, Guilherme R Lotufo, Jacob K Stanley, Mitchell S Wilbanks, Pornsawan Chappell

Aquat Toxicol· June 2018

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Stress relaxation in quasi-two-dimensional self-assembled nanoparticle monolayers.
Leandra S Boucheron, Jacob T Stanley, Yeling Dai, Siheng Sean You, Christopher T Parzyck

Phys Rev E· May 2018

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The increased toxicity of UV-degraded nitroguanidine and IMX-101 to zebrafish larvae: Evidence implicating oxidative stress.
Kurt A Gust, Jacob K Stanley, Mitchell S Wilbanks, Michael L Mayo, Pornsawan Chappell

Aquat Toxicol· September 2017

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Limitations of toxicity characterization in life cycle assessment: Can adverse outcome pathways provide a new foundation?
Kurt A Gust, Zachary A Collier, Michael L Mayo, Jacob K Stanley, Ping Gong

Integr Environ Assess Manag· July 2016

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Sublethal effects of multiwalled carbon nanotube exposure in the invertebrate Daphnia magna.
Jacob K Stanley, Jennifer G Laird, Alan J Kennedy, Jeffery A Steevens

Environ Toxicol Chem· January 2016

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Novel comparison of microscopy and diffraction techniques on the structure of iron oxide nanoparticle monolayers transferred by Langmuir-Schaefer method.
Jacob Stanley, Yeling Dai, Leandra Boucheron, Binhua Lin, Mati Meron

Rev Sci Instrum· June 2015

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Bioaccumulation kinetics of the conventional energetics TNT and RDX relative to insensitive munitions constituents DNAN and NTO in Rana pipiens tadpoles.
Guilherme R Lotufo, James M Biedenbach, Jerre G Sims, Pornsawan Chappell, Jacob K Stanley

Environ Toxicol Chem· April 2015

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Toxicity of the conventional energetics TNT and RDX relative to new insensitive munitions constituents DNAN and NTO in Rana pipiens tadpoles.
Jacob K Stanley, Guilherme R Lotufo, James M Biedenbach, Pornsawan Chappell, Kurt A Gust

Environ Toxicol Chem· April 2015

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Environmental assessment of depleted uranium used in military armor-piercing rounds in terrestrial systems.
Jacob K Stanley, Jessica G Coleman, Sandra M Brasfield, Anthony J Bednar, Choo Y Ang

Environ Toxicol Chem· June 2014

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Influence of carbon and metal oxide nanomaterials on aqueous concentrations of the munition constituents cyclotrimethylenetrinitramine (RDX) and tungsten.
Jonathon A Brame, Alan J Kennedy, Christopher D Lounds, Anthony J Bednar, Pedro J J Alvarez, Jacob K Stanley

Environ Toxicol Chem· May 2014

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Algal growth stimulation and toxicity in response to exposure to the new insensitive military high-nitrogen energetic triaminoguanidinium-1-methyl-5-nitriminotetrazolate.
Jacob K Stanley, James M Biedenbach, Amber L Russell, Anthony J Bednar

Environ Toxicol Chem· March 2014

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