Publications by authors named "Jacques Chomilier"

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Robust Conformational Space Exploration of Cyclic Peptides by Combining Different MD Protocols and Force Fields.
Samuel Murail, Jaysen Sawmynaden, Akli Zemirli, Maud Jusot, Fabio Pietrucci, Jacques Chomilier

J Chem Theory Comput· October 2025

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Origins and Functional Significance of Eukaryotic Protein Folds.
Martin Romei, Mathilde Carpentier, Jacques Chomilier, Guillaume Lecointre

J Mol Evol· December 2023

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Analyses of Mutation Displacements from Homology Models.
Mathilde Carpentier, Jacques Chomilier

Methods Mol Biol· March 2023

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Protein folds as synapomorphies of the tree of life.
Martin Romei, Guillaume Sapriel, Pierre Imbert, Théo Jamay, Jacques Chomilier

Evolution· August 2022

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Analyses of displacements resulting from a point mutation in proteins.
Mathilde Carpentier, Jacques Chomilier

J Struct Biol· August 2020

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TEF 2.0: a graph-based method for decomposing protein structures into closed loops.
Dirk Stratmann, Jananan S Pathmanathan, Guillaume Postic, Julien Rey, Jacques Chomilier

J Biomol Struct Dyn· October 2019

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Protein multiple alignments: sequence-based versus structure-based programs.
Mathilde Carpentier, Jacques Chomilier

Bioinformatics· October 2019

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Exhaustive Exploration of the Conformational Landscape of Small Cyclic Peptides Using a Robotics Approach.
Maud Jusot, Dirk Stratmann, Marc Vaisset, Jacques Chomilier, Juan Cortés

J Chem Inf Model· November 2018

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Structural effects of point mutations in proteins.
Suvethigaa Shanthirabalan, Jacques Chomilier, Mathilde Carpentier

Proteins· August 2018

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MyPMFs: a simple tool for creating statistical potentials to assess protein structural models.
Guillaume Postic, Thomas Hamelryck, Jacques Chomilier, Dirk Stratmann

Biochimie· August 2018

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Contribution to the prediction of the fold code: application to immunoglobulin and flavodoxin cases.
Mateusz Banach, Nicolas Prudhomme, Mathilde Carpentier, Elodie Duprat, Nikolaos Papandreou, Jacques Chomilier

PLoS One· January 2016

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Managing and Documenting Legacy Scientific Workflows.
Ruben Acuña, Jacques Chomilier, Zoé Lacroix

J Integr Bioinform· October 2015

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Recombination of chl-fus gene (Plastid Origin) downstream of hop: a locus of chromosomal instability.
Libia Catalina Salinas Castellanos, Jacques Chomilier, Jorge Hernández-Torres

BMC Genomics· August 2015

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Prediction of the protein folding core: application to the immunoglobulin fold.
Nicolas Prudhomme, Jacques Chomilier

Biochimie· April 2010

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Prediction of stability upon point mutation in the context of the folding nucleus.
Mathieu Lonquety, Jacques Chomilier, Nikolaos Papandreou, Zoé Lacroix

OMICS· April 2010

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Quantitative prediction of critical amino acid positions for protein folding.
Trias Thireou, Vassilios Atlamazoglou, Nikolaos A Papandreou, Mathieu Lonquety, Jacques Chomilier

Protein Pept Lett· March 2010

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Sequence analyses reveal that a TPR-DP module, surrounded by recombinable flanking introns, could be at the origin of eukaryotic Hop and Hip TPR-DP domains and prokaryotic GerD proteins.
Jorge Hernández Torres, Nikolaos Papandreou, Jacques Chomilier

Cell Stress Chaperones· May 2009

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SPROUTS: a database for the evaluation of protein stability upon point mutation.
Mathieu Lonquety, Zoé Lacroix, Nikolaos Papandreou, Jacques Chomilier

Nucleic Acids Res· January 2009

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Tandem duplications of a degenerated GTP-binding domain at the origin of GTPase receptors Toc159 and thylakoidal SRP.
Jorge Hernández Torres, Mónica Alexandra Arias Maldonado, Jacques Chomilier

Biochem Biophys Res Commun· December 2007

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Mutations in SPG11, encoding spatacsin, are a major cause of spastic paraplegia with thin corpus callosum.
Giovanni Stevanin, Filippo M Santorelli, Hamid Azzedine, Paula Coutinho, Jacques Chomilier

Nat Genet· March 2007

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Improvement of collagen-induced arthritis by active immunization against murine IL-1beta peptides designed by molecular modelling.
Sébastien M Bertin-Maghit, Christelle J Capini, Natacha Bessis, Jacques Chomilier, Sylviane Muller

Vaccine· July 2005

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Filtering redundancies for sequence similarity search programs.
Hubert Cantalloube, Jacques Chomilier, Sylvain Chiusa, Mathieu Lonquety, Jean-Louis Spadoni

J Biomol Struct Dyn· February 2005

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Universal positions in globular proteins.
Nikolaos Papandreou, Igor N Berezovsky, Anne Lopes, Elias Eliopoulos, Jacques Chomilier

Eur J Biochem· December 2004

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Identification of two immunogenic domains of the prion protein--PrP--which activate class II-restricted T cells and elicit antibody responses against the native molecule.
Sylvie Gregoire, Caroline Logre, Pat Metharom, Estelle Loing, Jacques Chomilier

J Leukoc Biol· July 2004

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Analysis of fragments induced by simulated lattice protein folding.
Jacques Chomilier, Marc Lamarine, Jean-Paul Mornon, Jorge Hernandez Torres, Elias Eliopoulos

C R Biol· May 2004

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