Publications by authors named "Jacques Dainat"

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Characterization and comparative genome analysis of a new Tequintavirus isolated on Salmonella enterica serotype Tennessee.
Amandine Maurin, Carlos Zarate-Chaves, Cécile Breyton, Jacques Dainat, Alexandre Feugier

BMC Res Notes· November 2025

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Genome sequences of six clinical isolates of exhibiting different degrees and temporal regulation of biofilm formation.
Sulman Shafeeq, Srisuda Pannanusorn, Jacques Dainat, Ali Dadvar, Christian Tellgren-Roth

Microbiol Resour Announc· September 2025

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AI algorithm combined with RNA editing-based blood biomarkers to discriminate bipolar from major depressive disorders in an external validation multicentric cohort.
Nicolas Salvetat, Francisco Jesus Checa-Robles, Aurélie Delacrétaz, Christopher Cayzac, Benjamin Dubuc, Jacques Dainat

J Affect Disord· July 2024

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Illuminating the function of the orphan transporter, SLC22A10, in humans and other primates.
Sook Wah Yee, Luis Ferrández-Peral, Pol Alentorn-Moron, Claudia Fontsere, Merve Ceylan, Jacques Dainat

Nat Commun· May 2024

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Illuminating the Function of the Orphan Transporter, SLC22A10 in Humans and Other Primates.
Sook Wah Yee, Luis Ferrández-Peral, Pol Alentorn, Claudia Fontsere, Merve Ceylan, Jacques Dainat

Res Sq· September 2023

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Illuminating the Function of the Orphan Transporter, SLC22A10 in Humans and Other Primates.
Sook Wah Yee, Luis Ferrández-Peral, Pol Alentorn, Claudia Fontsere, Merve Ceylan, Jacques Dainat

bioRxiv· August 2023

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Genomic analyses of the Linum distyly supergene reveal convergent evolution at the molecular level.
Juanita Gutiérrez-Valencia, Marco Fracassetti, Emma L Berdan, Ignas Bunikis, Lucile Soler, Jacques Dainat

Curr Biol· October 2022

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TEsorter: an accurate and fast method to classify LTR-retrotransposons in plant genomes.
Ren-Gang Zhang, Guang-Yuan Li, Xiao-Ling Wang, Jacques Dainat, Zhao-Xuan Wang

Hortic Res· February 2022

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Methods to Identify and Study the Evolution of Pseudogenes Using a Phylogenetic Approach.
Jacques Dainat, Pierre Pontarotti

Methods Mol Biol· August 2021

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Genome assemblies of three closely related leaf beetle species (Galerucella spp.).
Xuyue Yang, Tanja Slotte, Jacques Dainat, Peter A Hambäck

G3 (Bethesda)· August 2021

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Genome assembly of the basket willow, Salix viminalis, reveals earliest stages of sex chromosome expansion.
Pedro Almeida, Estelle Proux-Wera, Allison Churcher, Lucile Soler, Jacques Dainat

BMC Biol· June 2020

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Chromosomal genome assembly of the ethanol production strain CBS 11270 indicates a highly dynamic genome structure in the yeast species Brettanomyces bruxellensis.
Ievgeniia A Tiukova, Mats E Pettersson, Marc P Hoeppner, Remi-Andre Olsen, Max Käller, Jacques Dainat

PLoS One· January 2020

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The genomic footprint of sexual conflict.
Ahmed Sayadi, Alvaro Martinez Barrio, Elina Immonen, Jacques Dainat, David Berger

Nat Ecol Evol· December 2019

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Assembly and Analysis of the Genome Sequence of the Yeast CBS 7540.
Ievgeniia A Tiukova, Huifeng Jiang, Jacques Dainat, Marc P Hoeppner, Henrik Lantz

Microorganisms· October 2019

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Pervasive hybridizations in the history of wheat relatives.
Sylvain Glémin, Celine Scornavacca, Jacques Dainat, Concetta Burgarella, Véronique Viader

Sci Adv· May 2019

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EMBLmyGFF3: a converter facilitating genome annotation submission to European Nucleotide Archive.
Martin Norling, Niclas Jareborg, Jacques Dainat

BMC Res Notes· August 2018

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Global analysis of biosynthetic gene clusters reveals vast potential of secondary metabolite production in Penicillium species.
Jens Christian Nielsen, Sietske Grijseels, Sylvain Prigent, Boyang Ji, Jacques Dainat

Nat Microbiol· April 2017

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Complete Genome Sequences of the Xylose-Fermenting Strains CBS 141442 and PYCC 4715.
Antonio D Moreno, Christian Tellgren-Roth, Lucile Soler, Jacques Dainat, Lisbeth Olsson

Genome Announc· April 2017

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The genetic basis for ecological adaptation of the Atlantic herring revealed by genome sequencing.
Alvaro Martinez Barrio, Sangeet Lamichhaney, Guangyi Fan, Nima Rafati, Mats Pettersson, Jacques Dainat

Elife· May 2016

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The Bee Microbiome: Impact on Bee Health and Model for Evolution and Ecology of Host-Microbe Interactions.
Philipp Engel, Waldan K Kwong, Quinn McFrederick, Kirk E Anderson, Seth Michael Barribeau, Jacques Dainat, Benjamin Dainat

mBio· April 2016

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Methods to study the occurrence and the evolution of pseudogenes through a phylogenetic approach.
Jacques Dainat, Pierre Pontarotti

Methods Mol Biol· January 2015

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A universal genomic coordinate translator for comparative genomics.
Neda Zamani, Görel Sundström, Jennifer R S Meadows, Marc P Höppner, Jacques Dainat

BMC Bioinformatics· June 2014

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Impact of recurrent gene duplication on adaptation of plant genomes.
Iris Fischer, Jacques Dainat, Vincent Ranwez, Sylvain Glémin, Jean-François Dufayard

BMC Plant Biol· May 2014

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GLADX: an automated approach to analyze the lineage-specific loss and pseudogenization of genes.
Jacques Dainat, Julien Paganini, Pierre Pontarotti, Philippe Gouret

PLoS One· December 2012

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The chordate proteome history database.
Anthony Levasseur, Julien Paganini, Jacques Dainat, Julie D Thompson, Olivier Poch

Evol Bioinform Online· August 2012

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