Publications by authors named "Jaebeom Kim"

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Dual mechanism of autophagy gene repression by PHF23 and therapeutic potential of its inhibition in protein aggregation disorders.
Seon Ah Choi, Jaebeom Kim, Young Suk Yu, Jaemin Kim, Se In Kim, Keun Il Kim

Nucleic Acids Res· November 2025

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Easy and interactive taxonomic profiling with Metabuli App.
SunJae Lee, Jaebeom Kim, Milot Mirdita, Cameron L M Gilchrist, Martin Steinegger

Bioinformatics· October 2025

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COmapper: high-resolution mapping of meiotic crossovers by long-read sequencing in Arabidopsis.
Dohwan Byun, Namil Son, Heejin Kim, Jaeil Kim, Jihye Park, Hyein Kim, Jaebeom Kim, Juhyun Kim

New Phytol· August 2025

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Transcriptional repression of autophagy and lysosome biogenesis.
Jaebeom Kim, Young Suk Yu, Keun Il Kim, Sung Hee Baek

Autophagy· June 2025

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USF2 and TFEB compete in regulating lysosomal and autophagy genes.
Jaebeom Kim, Young Suk Yu, Yehwa Choi, Do Hui Lee, Soobin Han, Dongha Kim, Hyunkyung Kim, Keun Il Kim

Nat Commun· September 2024

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Metabuli: sensitive and specific metagenomic classification via joint analysis of amino acid and DNA.
Jaebeom Kim, Martin Steinegger

Nat Methods· June 2024

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The chromatin-binding protein PHF6 functions as an E3 ubiquitin ligase of H2BK120 via H2BK12Ac recognition for activation of trophectodermal genes.
Sungryong Oh, Kyungjin Boo, Jaebeom Kim, Seon Ah Baek, Yoon Jeon

Nucleic Acids Res· September 2020

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Lysine-specific demethylase 3A is important for autophagic occurrence.
Joomyung Kim, Seon Ah Choi, Jaebeom Kim, Hyunkyung Kim, Sung Hee Baek

Biochem Biophys Res Commun· May 2020

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Lissajous Scanning Two-photon Endomicroscope for In vivo Tissue Imaging.
Daniel Youngsuk Kim, Kyungmin Hwang, Jinhyo Ahn, Yeong-Hyeon Seo, Jae-Beom Kim, Pilhan Kim

Sci Rep· March 2019

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Fiber-optic plasmonic probe with nanogap-rich Au nanoislands for on-site surface-enhanced Raman spectroscopy using repeated solid-state dewetting.
Jihyun Kwak, Wonkyoung Lee, Jae-Beom Kim, Sang-In Bae, Ki-Hun Jeong

J Biomed Opt· March 2019

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Batch fabrication of functional optical elements on a fiber facet using DMD based maskless lithography.
Jae-Beom Kim, Ki-Hun Jeong

Opt Express· July 2017

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Atrial septal defect with normal pulmonary arterial pressure in adult cyanotic patient.
In-Cheol Kim, Hyungseop Kim, Jeung-Eun Lee, Hyuck-Jun Yoon, Jae-Beom Kim, Jae-Hyun Kim

J Cardiovasc Ultrasound· December 2014

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Clonal precursor of bone, cartilage, and hematopoietic niche stromal cells.
Charles K F Chan, Paul Lindau, Wen Jiang, James Y Chen, Lillian F Zhang, Jae-Beom Kim

Proc Natl Acad Sci U S A· July 2013

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Focal adhesion kinase plays a role in osteoblast mechanotransduction in vitro but does not affect load-induced bone formation in vivo.
Alesha B Castillo, Jennifer T Blundo, Julia C Chen, Kristen L Lee, Nikitha Reddy Yereddi, Jae-Beom Kim

PLoS One· March 2013

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High resolution in vivo bioluminescent imaging for the study of bacterial tumour targeting.
Michelle Cronin, Ali R Akin, Sara A Collins, Jeff Meganck, Jae-Beom Kim

PLoS One· June 2012

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Imaging pulmonary NF-kappaB activation and therapeutic effects of MLN120B and TDZD-8.
Dan Ansaldi, Eldad A Hod, Fabio Stellari, Jae-Beom Kim, Ed Lim

PLoS One· February 2012

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Beta1 integrins mediate mechanosensitive signaling pathways in osteocytes.
Julie B Litzenberger, Jae-Beom Kim, Padmaja Tummala, Christopher R Jacobs

Calcif Tissue Int· April 2010

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Non-invasive detection of a small number of bioluminescent cancer cells in vivo.
Jae-Beom Kim, Konnie Urban, Edward Cochran, Steve Lee, Angel Ang

PLoS One· February 2010

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In vivo bioluminescent imaging of mammary tumors using IVIS spectrum.
Ed Lim, Kshitij D Modi, Jaebeom Kim

J Vis Exp· April 2009

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Focal adhesion kinase is important for fluid shear stress-induced mechanotransduction in osteoblasts.
Suzanne R L Young, Rita Gerard-O'Riley, Jae-Beom Kim, Fredrick M Pavalko

J Bone Miner Res· March 2009

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Endochondral ossification is required for haematopoietic stem-cell niche formation.
Charles K F Chan, Ching-Cheng Chen, Cynthia A Luppen, Jae-Beom Kim, Anthony T DeBoer

Nature· January 2009

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Embryonic origin and Hox status determine progenitor cell fate during adult bone regeneration.
Philipp Leucht, Jae-Beom Kim, Raimy Amasha, Aaron W James, Sabine Girod

Development· September 2008

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Liposomal packaging generates Wnt protein with in vivo biological activity.
Nathan T Morrell, Philipp Leucht, Ludan Zhao, Jae-Beom Kim, Derk ten Berge

PLoS One· August 2008

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CRBL cells: establishment, characterization and susceptibility to prion infection.
Charles E Mays, Hae-Eun Kang, Younghwan Kim, Sung Han Shim, Ji-Eun Bang, Jae-Beom Kim

Brain Res· May 2008

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Beta-catenin-dependent Wnt signaling in mandibular bone regeneration.
Philipp Leucht, Jae-Beom Kim, Jill A Helms

J Bone Joint Surg Am· February 2008

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